scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__87_C1,6 Lung Primary cancer 2,452 0.10 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_C1,7 Lung Primary cancer 1,696 0.20 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C1,8 Lung Primary cancer 2,518 0.27 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C2,1 Lung Primary cancer 375 0.32 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C2,10 Lung Primary cancer 3,909 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C2,11 Lung Primary cancer 2,149 0.14 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_C2,12 Lung Primary cancer 2,290 0.27 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C2,13 Lung Primary cancer 2,176 0.36 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_C2,14 Lung Primary cancer 2,940 0.42 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_C2,15 Lung Primary cancer 1,413 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C2,16 Lung Primary cancer 5,954 0.02 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_C2,17 Lung Primary cancer 1,544 0.13 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_C2,2 Lung Primary cancer 3,016 0.30 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C2,3 Lung Primary cancer 1,881 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C2,4 Lung Primary cancer 3,978 0.28 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C2,5 Lung Primary cancer 2,307 0.43 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_C2,6 Lung Primary cancer 2,910 0.32 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C2,7 Lung Primary cancer 3,697 0.41 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_C2,8 Lung Primary cancer 2,840 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C2,9 Lung Primary cancer 3,072 0.30 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__87_C1,6 Lung Primary cancer 2,452 0.10 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_C1,7 Lung Primary cancer 1,696 0.20 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C1,8 Lung Primary cancer 2,518 0.27 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C2,1 Lung Primary cancer 375 0.32 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C2,10 Lung Primary cancer 3,909 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C2,11 Lung Primary cancer 2,149 0.14 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_C2,12 Lung Primary cancer 2,290 0.27 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C2,13 Lung Primary cancer 2,176 0.36 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_C2,14 Lung Primary cancer 2,940 0.42 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_C2,15 Lung Primary cancer 1,413 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C2,16 Lung Primary cancer 5,954 0.02 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_C2,17 Lung Primary cancer 1,544 0.13 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_C2,2 Lung Primary cancer 3,016 0.30 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C2,3 Lung Primary cancer 1,881 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C2,4 Lung Primary cancer 3,978 0.34 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C2,5 Lung Primary cancer 2,307 0.43 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_C2,6 Lung Primary cancer 2,910 0.32 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C2,7 Lung Primary cancer 3,697 0.41 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_C2,8 Lung Primary cancer 2,840 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C2,9 Lung Primary cancer 3,072 0.30 0.17 Weakly structured Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__87_C1,6 Lung Primary cancer 2,452 0.10 0.08 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_C1,7 Lung Primary cancer 1,696 0.21 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_C1,8 Lung Primary cancer 2,518 0.27 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_C2,1 Lung Primary cancer 375 0.32 0.14 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_C2,10 Lung Primary cancer 3,909 0.24 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_C2,11 Lung Primary cancer 2,149 0.14 0.14 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_C2,12 Lung Primary cancer 2,290 0.27 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_C2,13 Lung Primary cancer 2,176 0.36 0.15 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_C2,14 Lung Primary cancer 2,940 0.42 0.07 Highly modular Weakly segregated
NSCLC_38242124__IMC__87_C2,15 Lung Primary cancer 1,413 0.21 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_C2,16 Lung Primary cancer 5,954 0.03 0.09 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_C2,17 Lung Primary cancer 1,544 0.13 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_C2,2 Lung Primary cancer 3,016 0.30 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_C2,3 Lung Primary cancer 1,881 0.25 0.07 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_C2,4 Lung Primary cancer 3,978 0.36 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__87_C2,5 Lung Primary cancer 2,307 0.43 0.12 Highly modular Weakly segregated
NSCLC_38242124__IMC__87_C2,6 Lung Primary cancer 2,910 0.32 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_C2,7 Lung Primary cancer 3,697 0.41 0.12 Highly modular Weakly segregated
NSCLC_38242124__IMC__87_C2,8 Lung Primary cancer 2,840 0.25 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_C2,9 Lung Primary cancer 3,072 0.30 0.11 Weakly structured Weakly segregated