scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__87_C3,1 Lung Primary cancer 3,752 0.37 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_C3,10 Lung Primary cancer 2,477 0.20 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C3,11 Lung Primary cancer 2,742 0.13 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_C3,12 Lung Primary cancer 3,430 0.08 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_C3,13 Lung Primary cancer 885 0.20 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C3,14 Lung Primary cancer 3,208 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C3,16 Lung Primary cancer 5,307 0.04 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_C3,2 Lung Primary cancer 1,101 0.35 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_C3,3 Lung Primary cancer 3,315 0.19 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C3,4 Lung Primary cancer 3,630 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C3,5 Lung Primary cancer 279 0.10 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_C3,6 Lung Primary cancer 2,612 0.14 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_C3,7 Lung Primary cancer 3,981 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C3,8 Lung Primary cancer 2,734 0.27 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C3,9 Lung Primary cancer 4,620 0.19 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C4,1 Lung Primary cancer 2,293 0.47 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_C4,10 Lung Primary cancer 2,721 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C4,11 Lung Primary cancer 2,834 0.31 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C4,12 Lung Primary cancer 2,917 0.12 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_C4,13 Lung Primary cancer 3,295 0.18 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__87_C3,1 Lung Primary cancer 3,752 0.37 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_C3,10 Lung Primary cancer 2,477 0.20 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C3,11 Lung Primary cancer 2,742 0.13 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_C3,12 Lung Primary cancer 3,430 0.08 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_C3,13 Lung Primary cancer 885 0.20 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C3,14 Lung Primary cancer 3,208 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C3,16 Lung Primary cancer 5,307 0.04 0.19 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_C3,2 Lung Primary cancer 1,101 0.35 0.12 Highly modular Weakly segregated
NSCLC_38242124__IMC__87_C3,3 Lung Primary cancer 3,315 0.19 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C3,4 Lung Primary cancer 3,630 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C3,5 Lung Primary cancer 279 0.10 0.15 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_C3,6 Lung Primary cancer 2,612 0.14 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_C3,7 Lung Primary cancer 3,981 0.27 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C3,8 Lung Primary cancer 2,734 0.27 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C3,9 Lung Primary cancer 4,620 0.19 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C4,1 Lung Primary cancer 2,293 0.47 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_C4,10 Lung Primary cancer 2,721 0.17 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C4,11 Lung Primary cancer 2,834 0.31 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C4,12 Lung Primary cancer 2,917 0.12 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_C4,13 Lung Primary cancer 3,295 0.18 0.17 Weakly structured Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__87_C3,1 Lung Primary cancer 3,752 0.37 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__87_C3,10 Lung Primary cancer 2,477 0.20 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_C3,11 Lung Primary cancer 2,742 0.13 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_C3,12 Lung Primary cancer 3,430 0.08 0.08 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_C3,13 Lung Primary cancer 885 0.20 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_C3,14 Lung Primary cancer 3,208 0.24 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_C3,16 Lung Primary cancer 5,307 0.05 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_C3,2 Lung Primary cancer 1,101 0.35 0.06 Highly modular Weakly segregated
NSCLC_38242124__IMC__87_C3,3 Lung Primary cancer 3,315 0.19 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_C3,4 Lung Primary cancer 3,630 0.28 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_C3,5 Lung Primary cancer 279 0.13 0.14 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_C3,6 Lung Primary cancer 2,612 0.14 0.09 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_C3,7 Lung Primary cancer 3,981 0.27 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_C3,8 Lung Primary cancer 2,734 0.27 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_C3,9 Lung Primary cancer 4,620 0.19 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_C4,1 Lung Primary cancer 2,293 0.47 0.14 Highly modular Weakly segregated
NSCLC_38242124__IMC__87_C4,10 Lung Primary cancer 2,721 0.17 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_C4,11 Lung Primary cancer 2,834 0.31 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_C4,12 Lung Primary cancer 2,917 0.12 0.12 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_C4,13 Lung Primary cancer 3,295 0.18 0.12 Weakly structured Weakly segregated