scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__87_C7,10 Lung Primary cancer 3,319 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C7,11 Lung Primary cancer 3,593 0.09 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_C7,12 Lung Primary cancer 2,821 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C7,13 Lung Primary cancer 2,047 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C7,14 Lung Primary cancer 287 0.19 0.26 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C7,15 Lung Primary cancer 31 0.05 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_C7,16 Lung Primary cancer 1,929 0.37 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_C7,17 Lung Primary cancer 1,224 0.12 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_C7,2 Lung Primary cancer 2,400 0.20 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C7,4 Lung Primary cancer 3,448 0.16 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C7,5 Lung Primary cancer 2,372 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C7,6 Lung Primary cancer 2,851 0.35 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C7,7 Lung Primary cancer 3,276 0.35 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C7,8 Lung Primary cancer 2,571 0.32 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C7,9 Lung Primary cancer 3,011 0.32 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C8,1 Lung Primary cancer 2,861 0.31 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C8,10 Lung Primary cancer 3,523 0.19 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C8,11 Lung Primary cancer 4,114 0.27 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C8,12 Lung Primary cancer 4,101 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C8,13 Lung Primary cancer 1,447 0.15 0.20 Homogeneous Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__87_C7,10 Lung Primary cancer 3,319 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C7,11 Lung Primary cancer 3,593 0.09 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_C7,12 Lung Primary cancer 2,821 0.17 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C7,13 Lung Primary cancer 2,047 0.23 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_C7,14 Lung Primary cancer 287 0.19 0.23 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C7,15 Lung Primary cancer 31 0.05 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_C7,16 Lung Primary cancer 1,929 0.37 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_C7,17 Lung Primary cancer 1,224 0.12 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_C7,2 Lung Primary cancer 2,400 0.20 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C7,4 Lung Primary cancer 3,448 0.16 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C7,5 Lung Primary cancer 2,372 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C7,6 Lung Primary cancer 2,851 0.37 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_C7,7 Lung Primary cancer 3,276 0.35 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C7,8 Lung Primary cancer 2,571 0.32 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C7,9 Lung Primary cancer 3,011 0.32 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C8,1 Lung Primary cancer 2,861 0.31 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C8,10 Lung Primary cancer 3,523 0.20 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C8,11 Lung Primary cancer 4,114 0.27 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C8,12 Lung Primary cancer 4,101 0.17 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C8,13 Lung Primary cancer 1,447 0.15 0.17 Weakly structured Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__87_C7,10 Lung Primary cancer 3,319 0.25 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_C7,11 Lung Primary cancer 3,593 0.09 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_C7,12 Lung Primary cancer 2,821 0.17 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_C7,13 Lung Primary cancer 2,047 0.23 0.07 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_C7,14 Lung Primary cancer 287 0.20 0.15 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C7,15 Lung Primary cancer 31 0.05 0.12 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_C7,16 Lung Primary cancer 1,929 0.37 0.13 Highly modular Weakly segregated
NSCLC_38242124__IMC__87_C7,17 Lung Primary cancer 1,224 0.12 0.07 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_C7,2 Lung Primary cancer 2,400 0.20 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_C7,4 Lung Primary cancer 3,448 0.16 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_C7,5 Lung Primary cancer 2,372 0.25 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_C7,6 Lung Primary cancer 2,851 0.37 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__87_C7,7 Lung Primary cancer 3,276 0.35 0.13 Highly modular Weakly segregated
NSCLC_38242124__IMC__87_C7,8 Lung Primary cancer 2,571 0.32 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_C7,9 Lung Primary cancer 3,011 0.32 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_C8,1 Lung Primary cancer 2,861 0.31 0.07 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_C8,10 Lung Primary cancer 3,523 0.22 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_C8,11 Lung Primary cancer 4,114 0.27 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_C8,12 Lung Primary cancer 4,101 0.21 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_C8,13 Lung Primary cancer 1,447 0.15 0.10 Weakly structured Weakly segregated