scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Spatial Domain

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Spatial Domain (Tier 1)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__87_C8,14 Lung Primary cancer 3,518 Tumor/Malignant 78.5% 0.99 0.03
NSCLC_38242124__IMC__87_C8,15 Lung Primary cancer 2,755 Immune 25.6% 0.34 1.00
NSCLC_38242124__IMC__87_C8,16 Lung Primary cancer 888 Stromal 29.7% 0.39 0.95
NSCLC_38242124__IMC__87_C8,17 Lung Primary cancer 734 Other 33.9% 0.34 0.95
NSCLC_38242124__IMC__87_C8,2 Lung Primary cancer 2,429 Tumor/Malignant 48.7% 0.89 0.35
NSCLC_38242124__IMC__87_C8,3 Lung Primary cancer 1,975 Immune 35.2% 0.33 0.99
NSCLC_38242124__IMC__87_C8,4 Lung Primary cancer 2,879 Tumor/Malignant 34.3% 0.56 0.78
NSCLC_38242124__IMC__87_C8,5 Lung Primary cancer 2,271 Stromal 52.7% 0.92 0.25
NSCLC_38242124__IMC__87_C8,6 Lung Primary cancer 3,518 Tumor/Malignant 42.7% 0.95 0.22
NSCLC_38242124__IMC__87_C8,7 Lung Primary cancer 3,142 Tumor/Malignant 62.2% 0.98 0.07
NSCLC_38242124__IMC__87_C8,8 Lung Primary cancer 2,268 Immune 33.1% 0.29 1.01
NSCLC_38242124__IMC__87_C8,9 Lung Primary cancer 2,466 Tumor/Malignant 29.0% 0.93 0.22
NSCLC_38242124__IMC__88_A1,1 Lung Primary cancer 3,920 Tumor/Malignant 59.6% 0.91 0.29
NSCLC_38242124__IMC__88_A1,10 Lung Primary cancer 2,846 Tumor/Malignant 76.9% 0.99 0.06
NSCLC_38242124__IMC__88_A1,11 Lung Primary cancer 2,755 Tumor/Malignant 46.0% 0.96 0.12
NSCLC_38242124__IMC__88_A1,12 Lung Primary cancer 3,172 Tumor/Malignant 45.6% 0.74 0.58
NSCLC_38242124__IMC__88_A1,13 Lung Primary cancer 2,621 Tumor/Malignant 66.1% 0.98 0.09
NSCLC_38242124__IMC__88_A1,14 Lung Primary cancer 1,569 Tumor/Malignant 44.6% 0.95 0.22
NSCLC_38242124__IMC__88_A1,15 Lung Primary cancer 2,801 Tumor/Malignant 39.3% 0.93 0.24
NSCLC_38242124__IMC__88_A1,16 Lung Primary cancer 2,975 Tumor/Malignant 65.1% 0.98 0.10

Spatial Domain (Tier 2)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__87_C8,14 Lung Primary cancer 3,518 Tumor/Malignant 74.3% 0.99 0.03
NSCLC_38242124__IMC__87_C8,15 Lung Primary cancer 2,755 Stromal 21.2% 0.29 1.08
NSCLC_38242124__IMC__87_C8,16 Lung Primary cancer 888 Stromal 33.8% 0.56 0.89
NSCLC_38242124__IMC__87_C8,17 Lung Primary cancer 734 Other 24.1% 0.45 0.94
NSCLC_38242124__IMC__87_C8,2 Lung Primary cancer 2,429 Tumor/Malignant 37.2% 0.94 0.24
NSCLC_38242124__IMC__87_C8,3 Lung Primary cancer 1,975 Tumor/Malignant 23.1% 0.86 0.46
NSCLC_38242124__IMC__87_C8,4 Lung Primary cancer 2,879 Tumor/Malignant 32.9% 0.93 0.31
NSCLC_38242124__IMC__87_C8,5 Lung Primary cancer 2,271 Stromal 40.5% 0.94 0.18
NSCLC_38242124__IMC__87_C8,6 Lung Primary cancer 3,518 Tumor/Malignant 30.2% 0.77 0.66
NSCLC_38242124__IMC__87_C8,7 Lung Primary cancer 3,142 Tumor/Malignant 61.9% 0.98 0.06
NSCLC_38242124__IMC__87_C8,8 Lung Primary cancer 2,268 Tumor/Malignant 25.2% 0.50 0.99
NSCLC_38242124__IMC__87_C8,9 Lung Primary cancer 2,466 Tumor/Malignant 28.0% 0.93 0.21
NSCLC_38242124__IMC__88_A1,1 Lung Primary cancer 3,920 Tumor/Malignant 33.6% 0.75 0.59
NSCLC_38242124__IMC__88_A1,10 Lung Primary cancer 2,846 Tumor/Malignant 76.4% 0.99 0.06
NSCLC_38242124__IMC__88_A1,11 Lung Primary cancer 2,755 Tumor/Malignant 46.2% 0.96 0.12
NSCLC_38242124__IMC__88_A1,12 Lung Primary cancer 3,172 Tumor/Malignant 46.1% 0.96 0.17
NSCLC_38242124__IMC__88_A1,13 Lung Primary cancer 2,621 Tumor/Malignant 66.3% 0.98 0.09
NSCLC_38242124__IMC__88_A1,14 Lung Primary cancer 1,569 Tumor/Malignant 44.7% 0.94 0.22
NSCLC_38242124__IMC__88_A1,15 Lung Primary cancer 2,801 Tumor/Malignant 32.8% 0.97 0.14
NSCLC_38242124__IMC__88_A1,16 Lung Primary cancer 2,975 Tumor/Malignant 55.2% 1.00 0.02

Spatial Domain (Tier 3)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__87_C8,14 Lung Primary cancer 3,518 Tumor/Malignant cell 78.7% 0.99 0.03
NSCLC_38242124__IMC__87_C8,15 Lung Primary cancer 2,755 Tumor/Malignant cell 22.7% 0.85 0.46
NSCLC_38242124__IMC__87_C8,16 Lung Primary cancer 888 Fibroblast 23.8% 0.74 0.68
NSCLC_38242124__IMC__87_C8,17 Lung Primary cancer 734 Other 32.3% 0.61 0.74
NSCLC_38242124__IMC__87_C8,2 Lung Primary cancer 2,429 Tumor/Malignant cell 49.1% 0.88 0.36
NSCLC_38242124__IMC__87_C8,3 Lung Primary cancer 1,975 Tumor/Malignant cell 30.1% 0.78 0.56
NSCLC_38242124__IMC__87_C8,4 Lung Primary cancer 2,879 Tumor/Malignant cell 40.8% 0.90 0.39
NSCLC_38242124__IMC__87_C8,5 Lung Primary cancer 2,271 Fibroblast 49.1% 0.92 0.26
NSCLC_38242124__IMC__87_C8,6 Lung Primary cancer 3,518 Tumor/Malignant cell 44.3% 0.94 0.24
NSCLC_38242124__IMC__87_C8,7 Lung Primary cancer 3,142 Tumor/Malignant cell 62.1% 0.98 0.07
NSCLC_38242124__IMC__87_C8,8 Lung Primary cancer 2,268 Tumor/Malignant cell 32.5% 0.78 0.64
NSCLC_38242124__IMC__87_C8,9 Lung Primary cancer 2,466 Tumor/Malignant cell 28.4% 0.93 0.22
NSCLC_38242124__IMC__88_A1,1 Lung Primary cancer 3,920 Tumor/Malignant cell 55.6% 0.93 0.26
NSCLC_38242124__IMC__88_A1,10 Lung Primary cancer 2,846 Tumor/Malignant cell 76.2% 0.99 0.06
NSCLC_38242124__IMC__88_A1,11 Lung Primary cancer 2,755 Tumor/Malignant cell 46.1% 0.96 0.12
NSCLC_38242124__IMC__88_A1,12 Lung Primary cancer 3,172 Tumor/Malignant cell 56.8% 0.93 0.24
NSCLC_38242124__IMC__88_A1,13 Lung Primary cancer 2,621 Tumor/Malignant cell 66.1% 0.98 0.09
NSCLC_38242124__IMC__88_A1,14 Lung Primary cancer 1,569 Tumor/Malignant cell 42.8% 0.95 0.20
NSCLC_38242124__IMC__88_A1,15 Lung Primary cancer 2,801 Tumor/Malignant cell 38.3% 0.93 0.23
NSCLC_38242124__IMC__88_A1,16 Lung Primary cancer 2,975 Tumor/Malignant cell 67.0% 0.97 0.12