scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__87_C8,14 Lung Primary cancer 3,518 0.29 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C8,15 Lung Primary cancer 2,755 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C8,16 Lung Primary cancer 888 0.13 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_C8,17 Lung Primary cancer 734 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C8,2 Lung Primary cancer 2,429 0.30 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C8,3 Lung Primary cancer 1,975 0.22 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C8,4 Lung Primary cancer 2,879 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C8,5 Lung Primary cancer 2,271 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C8,6 Lung Primary cancer 3,518 0.27 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C8,7 Lung Primary cancer 3,142 0.41 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_C8,8 Lung Primary cancer 2,268 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C8,9 Lung Primary cancer 2,466 0.32 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A1,1 Lung Primary cancer 3,920 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A1,10 Lung Primary cancer 2,846 0.01 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_A1,11 Lung Primary cancer 2,755 0.36 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_A1,12 Lung Primary cancer 3,172 0.19 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A1,13 Lung Primary cancer 2,621 0.20 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A1,14 Lung Primary cancer 1,569 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A1,15 Lung Primary cancer 2,801 0.36 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_A1,16 Lung Primary cancer 2,975 0.29 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__87_C8,14 Lung Primary cancer 3,518 0.29 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C8,15 Lung Primary cancer 2,755 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C8,16 Lung Primary cancer 888 0.13 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_C8,17 Lung Primary cancer 734 0.17 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C8,2 Lung Primary cancer 2,429 0.32 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C8,3 Lung Primary cancer 1,975 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C8,4 Lung Primary cancer 2,879 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C8,5 Lung Primary cancer 2,271 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C8,6 Lung Primary cancer 3,518 0.27 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C8,7 Lung Primary cancer 3,142 0.41 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_C8,8 Lung Primary cancer 2,268 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C8,9 Lung Primary cancer 2,466 0.34 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A1,1 Lung Primary cancer 3,920 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A1,10 Lung Primary cancer 2,846 0.01 0.15 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_A1,11 Lung Primary cancer 2,755 0.39 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_A1,12 Lung Primary cancer 3,172 0.19 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A1,13 Lung Primary cancer 2,621 0.20 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A1,14 Lung Primary cancer 1,569 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A1,15 Lung Primary cancer 2,801 0.36 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_A1,16 Lung Primary cancer 2,975 0.29 0.17 Weakly structured Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__87_C8,14 Lung Primary cancer 3,518 0.29 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_C8,15 Lung Primary cancer 2,755 0.26 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_C8,16 Lung Primary cancer 888 0.14 0.12 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_C8,17 Lung Primary cancer 734 0.18 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_C8,2 Lung Primary cancer 2,429 0.32 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_C8,3 Lung Primary cancer 1,975 0.24 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_C8,4 Lung Primary cancer 2,879 0.21 0.07 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_C8,5 Lung Primary cancer 2,271 0.26 0.14 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_C8,6 Lung Primary cancer 3,518 0.27 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_C8,7 Lung Primary cancer 3,142 0.41 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__87_C8,8 Lung Primary cancer 2,268 0.26 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_C8,9 Lung Primary cancer 2,466 0.34 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A1,1 Lung Primary cancer 3,920 0.21 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A1,10 Lung Primary cancer 2,846 0.01 0.06 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_A1,11 Lung Primary cancer 2,755 0.39 0.15 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_A1,12 Lung Primary cancer 3,172 0.19 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A1,13 Lung Primary cancer 2,621 0.20 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A1,14 Lung Primary cancer 1,569 0.26 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A1,15 Lung Primary cancer 2,801 0.36 0.08 Highly modular Weakly segregated
NSCLC_38242124__IMC__88_A1,16 Lung Primary cancer 2,975 0.29 0.09 Weakly structured Weakly segregated