scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Spatial Domain

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Spatial Domain (Tier 1)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__88_A1,2 Lung Primary cancer 26 Tumor/Malignant 100.0% 0.96 0.02
NSCLC_38242124__IMC__88_A1,3 Lung Primary cancer 1,919 Immune 27.8% 0.86 0.39
NSCLC_38242124__IMC__88_A1,4 Lung Primary cancer 86 Tumor/Malignant 87.2% 0.97 0.09
NSCLC_38242124__IMC__88_A1,5 Lung Primary cancer 410 Stromal 45.9% 0.89 0.32
NSCLC_38242124__IMC__88_A1,6 Lung Primary cancer 2,608 Tumor/Malignant 67.0% 0.95 0.15
NSCLC_38242124__IMC__88_A1,7 Lung Primary cancer 3,686 Tumor/Malignant 62.1% 0.97 0.13
NSCLC_38242124__IMC__88_A1,8 Lung Primary cancer 1,662 Stromal 37.5% 0.93 0.21
NSCLC_38242124__IMC__88_A1,9 Lung Primary cancer 4,187 Tumor/Malignant 33.2% 0.76 0.54
NSCLC_38242124__IMC__88_A2,1 Lung Primary cancer 4,162 Tumor/Malignant 49.6% 0.91 0.28
NSCLC_38242124__IMC__88_A2,10 Lung Primary cancer 2,723 Tumor/Malignant 35.7% 0.93 0.18
NSCLC_38242124__IMC__88_A2,11 Lung Primary cancer 3,636 Tumor/Malignant 51.3% 0.96 0.12
NSCLC_38242124__IMC__88_A2,12 Lung Primary cancer 1,485 Tumor/Malignant 31.8% 0.90 0.34
NSCLC_38242124__IMC__88_A2,13 Lung Primary cancer 1,977 Stromal 44.6% 0.87 0.34
NSCLC_38242124__IMC__88_A2,14 Lung Primary cancer 2,944 Tumor/Malignant 37.5% 0.99 0.05
NSCLC_38242124__IMC__88_A2,15 Lung Primary cancer 2,890 Other 30.6% 0.34 1.02
NSCLC_38242124__IMC__88_A2,16 Lung Primary cancer 3,143 Tumor/Malignant 86.7% 0.98 0.07
NSCLC_38242124__IMC__88_A2,2 Lung Primary cancer 2,338 Tumor/Malignant 40.4% 0.97 0.11
NSCLC_38242124__IMC__88_A2,3 Lung Primary cancer 1,983 Tumor/Malignant 47.3% 0.95 0.18
NSCLC_38242124__IMC__88_A2,4 Lung Primary cancer 3,229 Tumor/Malignant 29.2% 0.87 0.33
NSCLC_38242124__IMC__88_A2,5 Lung Primary cancer 1,642 Stromal 50.3% 0.96 0.11

Spatial Domain (Tier 2)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__88_A1,2 Lung Primary cancer 26 Tumor/Malignant 100.0% 0.96 0.02
NSCLC_38242124__IMC__88_A1,3 Lung Primary cancer 1,919 Myeloid 26.0% 0.83 0.46
NSCLC_38242124__IMC__88_A1,4 Lung Primary cancer 86 Tumor/Malignant 87.2% 0.97 0.09
NSCLC_38242124__IMC__88_A1,5 Lung Primary cancer 410 Stromal 63.4% 0.77 0.45
NSCLC_38242124__IMC__88_A1,6 Lung Primary cancer 2,608 Tumor/Malignant 65.2% 0.96 0.14
NSCLC_38242124__IMC__88_A1,7 Lung Primary cancer 3,686 Tumor/Malignant 51.5% 0.99 0.04
NSCLC_38242124__IMC__88_A1,8 Lung Primary cancer 1,662 Stromal 37.5% 0.73 0.60
NSCLC_38242124__IMC__88_A1,9 Lung Primary cancer 4,187 Tumor/Malignant 39.7% 0.96 0.16
NSCLC_38242124__IMC__88_A2,1 Lung Primary cancer 4,162 Tumor/Malignant 43.6% 0.93 0.23
NSCLC_38242124__IMC__88_A2,10 Lung Primary cancer 2,723 Tumor/Malignant 35.0% 0.93 0.17
NSCLC_38242124__IMC__88_A2,11 Lung Primary cancer 3,636 Tumor/Malignant 50.8% 0.96 0.11
NSCLC_38242124__IMC__88_A2,12 Lung Primary cancer 1,485 Tumor/Malignant 25.6% 0.94 0.24
NSCLC_38242124__IMC__88_A2,13 Lung Primary cancer 1,977 Stromal 36.1% 0.75 0.56
NSCLC_38242124__IMC__88_A2,14 Lung Primary cancer 2,944 Tumor/Malignant 46.4% 0.96 0.13
NSCLC_38242124__IMC__88_A2,15 Lung Primary cancer 2,890 Tumor/Malignant 26.1% 0.35 1.08
NSCLC_38242124__IMC__88_A2,16 Lung Primary cancer 3,143 Tumor/Malignant 79.7% 0.99 0.04
NSCLC_38242124__IMC__88_A2,2 Lung Primary cancer 2,338 Tumor/Malignant 39.6% 0.98 0.10
NSCLC_38242124__IMC__88_A2,3 Lung Primary cancer 1,983 Tumor/Malignant 45.6% 0.96 0.17
NSCLC_38242124__IMC__88_A2,4 Lung Primary cancer 3,229 Lymphoid 27.3% 0.90 0.27
NSCLC_38242124__IMC__88_A2,5 Lung Primary cancer 1,642 Stromal 46.1% 0.98 0.07

Spatial Domain (Tier 3)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__88_A1,2 Lung Primary cancer 26 Tumor/Malignant cell 100.0% 0.96 0.02
NSCLC_38242124__IMC__88_A1,3 Lung Primary cancer 1,919 Granulocyte 28.0% 0.76 0.57
NSCLC_38242124__IMC__88_A1,4 Lung Primary cancer 86 Tumor/Malignant cell 87.2% 0.97 0.09
NSCLC_38242124__IMC__88_A1,5 Lung Primary cancer 410 Fibroblast 62.4% 0.75 0.48
NSCLC_38242124__IMC__88_A1,6 Lung Primary cancer 2,608 Tumor/Malignant cell 66.7% 0.95 0.15
NSCLC_38242124__IMC__88_A1,7 Lung Primary cancer 3,686 Tumor/Malignant cell 61.7% 0.97 0.12
NSCLC_38242124__IMC__88_A1,8 Lung Primary cancer 1,662 Fibroblast 41.1% 0.80 0.41
NSCLC_38242124__IMC__88_A1,9 Lung Primary cancer 4,187 Tumor/Malignant cell 59.9% 0.88 0.31
NSCLC_38242124__IMC__88_A2,1 Lung Primary cancer 4,162 Tumor/Malignant cell 53.7% 0.89 0.30
NSCLC_38242124__IMC__88_A2,10 Lung Primary cancer 2,723 Tumor/Malignant cell 36.4% 0.92 0.19
NSCLC_38242124__IMC__88_A2,11 Lung Primary cancer 3,636 Tumor/Malignant cell 51.6% 0.96 0.13
NSCLC_38242124__IMC__88_A2,12 Lung Primary cancer 1,485 Tumor/Malignant cell 38.6% 0.83 0.45
NSCLC_38242124__IMC__88_A2,13 Lung Primary cancer 1,977 Fibroblast 39.1% 0.86 0.40
NSCLC_38242124__IMC__88_A2,14 Lung Primary cancer 2,944 Tumor/Malignant cell 59.2% 0.93 0.22
NSCLC_38242124__IMC__88_A2,15 Lung Primary cancer 2,890 Fibroblast 26.5% 0.42 1.07
NSCLC_38242124__IMC__88_A2,16 Lung Primary cancer 3,143 Tumor/Malignant cell 77.1% 1.00 0.03
NSCLC_38242124__IMC__88_A2,2 Lung Primary cancer 2,338 Tumor/Malignant cell 40.4% 0.97 0.11
NSCLC_38242124__IMC__88_A2,3 Lung Primary cancer 1,983 Tumor/Malignant cell 54.1% 0.94 0.23
NSCLC_38242124__IMC__88_A2,4 Lung Primary cancer 3,229 B cell 28.8% 0.56 0.71
NSCLC_38242124__IMC__88_A2,5 Lung Primary cancer 1,642 Fibroblast 51.3% 0.95 0.12