scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__88_A1,2 Lung Primary cancer 26 0.00 -0.33 Homogeneous Highly dispersed
NSCLC_38242124__IMC__88_A1,3 Lung Primary cancer 1,919 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A1,4 Lung Primary cancer 86 0.12 -0.02 Homogeneous Weakly mixed
NSCLC_38242124__IMC__88_A1,5 Lung Primary cancer 410 0.14 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_A1,6 Lung Primary cancer 2,608 0.28 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A1,7 Lung Primary cancer 3,686 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A1,8 Lung Primary cancer 1,662 0.10 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_A1,9 Lung Primary cancer 4,187 0.34 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A2,1 Lung Primary cancer 4,162 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A2,10 Lung Primary cancer 2,723 0.39 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_A2,11 Lung Primary cancer 3,636 0.39 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_A2,12 Lung Primary cancer 1,485 0.34 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A2,13 Lung Primary cancer 1,977 0.11 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_A2,14 Lung Primary cancer 2,944 0.34 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A2,15 Lung Primary cancer 2,890 0.27 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A2,16 Lung Primary cancer 3,143 0.06 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_A2,2 Lung Primary cancer 2,338 0.42 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_A2,3 Lung Primary cancer 1,983 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A2,4 Lung Primary cancer 3,229 0.32 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A2,5 Lung Primary cancer 1,642 0.29 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__88_A1,2 Lung Primary cancer 26 0.00 -0.33 Homogeneous Highly dispersed
NSCLC_38242124__IMC__88_A1,3 Lung Primary cancer 1,919 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A1,4 Lung Primary cancer 86 0.12 -0.03 Homogeneous Weakly mixed
NSCLC_38242124__IMC__88_A1,5 Lung Primary cancer 410 0.14 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_A1,6 Lung Primary cancer 2,608 0.28 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A1,7 Lung Primary cancer 3,686 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A1,8 Lung Primary cancer 1,662 0.11 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_A1,9 Lung Primary cancer 4,187 0.34 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A2,1 Lung Primary cancer 4,162 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A2,10 Lung Primary cancer 2,723 0.39 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_A2,11 Lung Primary cancer 3,636 0.39 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_A2,12 Lung Primary cancer 1,485 0.34 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A2,13 Lung Primary cancer 1,977 0.11 0.19 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_A2,14 Lung Primary cancer 2,944 0.34 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A2,15 Lung Primary cancer 2,890 0.28 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A2,16 Lung Primary cancer 3,143 0.06 0.23 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_A2,2 Lung Primary cancer 2,338 0.42 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_A2,3 Lung Primary cancer 1,983 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A2,4 Lung Primary cancer 3,229 0.35 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_A2,5 Lung Primary cancer 1,642 0.29 0.17 Weakly structured Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__88_A1,2 Lung Primary cancer 26 0.00 -0.33 Homogeneous Highly dispersed
NSCLC_38242124__IMC__88_A1,3 Lung Primary cancer 1,919 0.25 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A1,4 Lung Primary cancer 86 0.12 -0.05 Homogeneous Weakly mixed
NSCLC_38242124__IMC__88_A1,5 Lung Primary cancer 410 0.16 0.14 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A1,6 Lung Primary cancer 2,608 0.28 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A1,7 Lung Primary cancer 3,686 0.26 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A1,8 Lung Primary cancer 1,662 0.16 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A1,9 Lung Primary cancer 4,187 0.34 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A2,1 Lung Primary cancer 4,162 0.24 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A2,10 Lung Primary cancer 2,723 0.40 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__88_A2,11 Lung Primary cancer 3,636 0.39 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__88_A2,12 Lung Primary cancer 1,485 0.35 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A2,13 Lung Primary cancer 1,977 0.13 0.13 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_A2,14 Lung Primary cancer 2,944 0.34 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A2,15 Lung Primary cancer 2,890 0.28 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A2,16 Lung Primary cancer 3,143 0.06 0.12 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_A2,2 Lung Primary cancer 2,338 0.43 0.13 Highly modular Weakly segregated
NSCLC_38242124__IMC__88_A2,3 Lung Primary cancer 1,983 0.24 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A2,4 Lung Primary cancer 3,229 0.35 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__88_A2,5 Lung Primary cancer 1,642 0.29 0.10 Weakly structured Weakly segregated