scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Spatial Domain

Download spatial tables

Spatial Domain (Tier 1)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__88_A2,6 Lung Primary cancer 3,461 Tumor/Malignant 41.1% 0.96 0.19
NSCLC_38242124__IMC__88_A2,7 Lung Primary cancer 1,860 Tumor/Malignant 86.8% 0.99 0.02
NSCLC_38242124__IMC__88_A2,8 Lung Primary cancer 1,169 Stromal 49.4% 0.94 0.15
NSCLC_38242124__IMC__88_A2,9 Lung Primary cancer 3,898 Tumor/Malignant 42.3% 0.99 0.06
NSCLC_38242124__IMC__88_A3,1 Lung Primary cancer 2,563 Tumor/Malignant 45.6% 0.87 0.36
NSCLC_38242124__IMC__88_A3,10 Lung Primary cancer 3,551 Stromal 34.1% 0.76 0.59
NSCLC_38242124__IMC__88_A3,11 Lung Primary cancer 1,855 Stromal 31.3% 0.89 0.34
NSCLC_38242124__IMC__88_A3,12 Lung Primary cancer 2,749 Tumor/Malignant 30.2% 0.92 0.26
NSCLC_38242124__IMC__88_A3,13 Lung Primary cancer 2,710 Tumor/Malignant 61.1% 0.96 0.12
NSCLC_38242124__IMC__88_A3,14 Lung Primary cancer 2,364 Tumor/Malignant 46.1% 0.96 0.14
NSCLC_38242124__IMC__88_A3,16 Lung Primary cancer 3,270 Tumor/Malignant 58.2% 0.96 0.13
NSCLC_38242124__IMC__88_A3,2 Lung Primary cancer 2,814 Tumor/Malignant 73.3% 0.98 0.07
NSCLC_38242124__IMC__88_A3,3 Lung Primary cancer 3,654 Tumor/Malignant 38.1% 0.53 0.75
NSCLC_38242124__IMC__88_A3,4 Lung Primary cancer 3,733 Tumor/Malignant 82.3% 0.99 0.04
NSCLC_38242124__IMC__88_A3,6 Lung Primary cancer 1,653 Tumor/Malignant 38.5% 0.93 0.19
NSCLC_38242124__IMC__88_A3,7 Lung Primary cancer 3,220 Immune 32.8% 0.90 0.30
NSCLC_38242124__IMC__88_A3,8 Lung Primary cancer 2,029 Tumor/Malignant 58.7% 0.97 0.07
NSCLC_38242124__IMC__88_A3,9 Lung Primary cancer 2,418 Tumor/Malignant 26.0% 0.96 0.17
NSCLC_38242124__IMC__88_A4,1 Lung Primary cancer 2,500 Tumor/Malignant 37.3% 0.58 0.84
NSCLC_38242124__IMC__88_A4,10 Lung Primary cancer 3,599 Tumor/Malignant 56.4% 0.97 0.08

Spatial Domain (Tier 2)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__88_A2,6 Lung Primary cancer 3,461 Tumor/Malignant 41.9% 0.96 0.20
NSCLC_38242124__IMC__88_A2,7 Lung Primary cancer 1,860 Tumor/Malignant 85.6% 1.00 0.02
NSCLC_38242124__IMC__88_A2,8 Lung Primary cancer 1,169 Stromal 47.6% 0.95 0.14
NSCLC_38242124__IMC__88_A2,9 Lung Primary cancer 3,898 Tumor/Malignant 53.0% 0.96 0.14
NSCLC_38242124__IMC__88_A3,1 Lung Primary cancer 2,563 Tumor/Malignant 33.7% 0.94 0.22
NSCLC_38242124__IMC__88_A3,10 Lung Primary cancer 3,551 Stromal 37.2% 0.51 0.92
NSCLC_38242124__IMC__88_A3,11 Lung Primary cancer 1,855 Stromal 24.6% 0.75 0.64
NSCLC_38242124__IMC__88_A3,12 Lung Primary cancer 2,749 Tumor/Malignant 24.8% 0.96 0.15
NSCLC_38242124__IMC__88_A3,13 Lung Primary cancer 2,710 Tumor/Malignant 43.9% 0.96 0.11
NSCLC_38242124__IMC__88_A3,14 Lung Primary cancer 2,364 Tumor/Malignant 46.2% 0.97 0.14
NSCLC_38242124__IMC__88_A3,16 Lung Primary cancer 3,270 Tumor/Malignant 55.8% 0.97 0.12
NSCLC_38242124__IMC__88_A3,2 Lung Primary cancer 2,814 Tumor/Malignant 71.4% 0.99 0.06
NSCLC_38242124__IMC__88_A3,3 Lung Primary cancer 3,654 Tumor/Malignant 33.7% 0.94 0.27
NSCLC_38242124__IMC__88_A3,4 Lung Primary cancer 3,733 Tumor/Malignant 77.8% 1.00 0.01
NSCLC_38242124__IMC__88_A3,6 Lung Primary cancer 1,653 Tumor/Malignant 35.6% 0.95 0.15
NSCLC_38242124__IMC__88_A3,7 Lung Primary cancer 3,220 Lymphoid 25.0% 0.59 0.87
NSCLC_38242124__IMC__88_A3,8 Lung Primary cancer 2,029 Tumor/Malignant 58.9% 0.97 0.08
NSCLC_38242124__IMC__88_A3,9 Lung Primary cancer 2,418 Tumor/Malignant 26.1% 0.96 0.17
NSCLC_38242124__IMC__88_A4,1 Lung Primary cancer 2,500 Tumor/Malignant 34.0% 0.58 0.83
NSCLC_38242124__IMC__88_A4,10 Lung Primary cancer 3,599 Tumor/Malignant 56.4% 0.97 0.08

Spatial Domain (Tier 3)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__88_A2,6 Lung Primary cancer 3,461 Tumor/Malignant cell 47.8% 0.94 0.26
NSCLC_38242124__IMC__88_A2,7 Lung Primary cancer 1,860 Tumor/Malignant cell 86.8% 0.99 0.02
NSCLC_38242124__IMC__88_A2,8 Lung Primary cancer 1,169 Fibroblast 45.8% 0.94 0.15
NSCLC_38242124__IMC__88_A2,9 Lung Primary cancer 3,898 Tumor/Malignant cell 64.4% 0.93 0.21
NSCLC_38242124__IMC__88_A3,1 Lung Primary cancer 2,563 Tumor/Malignant cell 45.3% 0.87 0.36
NSCLC_38242124__IMC__88_A3,10 Lung Primary cancer 3,551 Fibroblast 31.7% 0.72 0.70
NSCLC_38242124__IMC__88_A3,11 Lung Primary cancer 1,855 Fibroblast 32.0% 0.77 0.57
NSCLC_38242124__IMC__88_A3,12 Lung Primary cancer 2,749 Tumor/Malignant cell 29.8% 0.92 0.25
NSCLC_38242124__IMC__88_A3,13 Lung Primary cancer 2,710 Tumor/Malignant cell 61.1% 0.96 0.12
NSCLC_38242124__IMC__88_A3,14 Lung Primary cancer 2,364 Tumor/Malignant cell 50.5% 0.96 0.19
NSCLC_38242124__IMC__88_A3,16 Lung Primary cancer 3,270 Tumor/Malignant cell 58.6% 0.97 0.14
NSCLC_38242124__IMC__88_A3,2 Lung Primary cancer 2,814 Tumor/Malignant cell 79.4% 0.97 0.11
NSCLC_38242124__IMC__88_A3,3 Lung Primary cancer 3,654 Tumor/Malignant cell 41.1% 0.92 0.34
NSCLC_38242124__IMC__88_A3,4 Lung Primary cancer 3,733 Tumor/Malignant cell 82.9% 0.99 0.05
NSCLC_38242124__IMC__88_A3,6 Lung Primary cancer 1,653 Tumor/Malignant cell 41.6% 0.91 0.23
NSCLC_38242124__IMC__88_A3,7 Lung Primary cancer 3,220 T cell 31.6% 0.67 0.72
NSCLC_38242124__IMC__88_A3,8 Lung Primary cancer 2,029 Tumor/Malignant cell 58.8% 0.97 0.08
NSCLC_38242124__IMC__88_A3,9 Lung Primary cancer 2,418 Tumor/Malignant cell 32.9% 0.92 0.28
NSCLC_38242124__IMC__88_A4,1 Lung Primary cancer 2,500 Tumor/Malignant cell 48.7% 0.80 0.53
NSCLC_38242124__IMC__88_A4,10 Lung Primary cancer 3,599 Tumor/Malignant cell 55.0% 0.97 0.07