scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__88_A2,6 Lung Primary cancer 3,461 0.30 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A2,7 Lung Primary cancer 1,860 0.13 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_A2,8 Lung Primary cancer 1,169 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A2,9 Lung Primary cancer 3,898 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A3,1 Lung Primary cancer 2,563 0.31 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A3,10 Lung Primary cancer 3,551 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A3,11 Lung Primary cancer 1,855 0.20 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A3,12 Lung Primary cancer 2,749 0.29 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A3,13 Lung Primary cancer 2,710 0.38 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_A3,14 Lung Primary cancer 2,364 0.32 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A3,16 Lung Primary cancer 3,270 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A3,2 Lung Primary cancer 2,814 0.09 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_A3,3 Lung Primary cancer 3,654 0.22 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A3,4 Lung Primary cancer 3,733 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A3,6 Lung Primary cancer 1,653 0.37 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_A3,7 Lung Primary cancer 3,220 0.14 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_A3,8 Lung Primary cancer 2,029 0.41 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_A3,9 Lung Primary cancer 2,418 0.32 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A4,1 Lung Primary cancer 2,500 0.16 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A4,10 Lung Primary cancer 3,599 0.45 0.20 Highly modular Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__88_A2,6 Lung Primary cancer 3,461 0.30 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A2,7 Lung Primary cancer 1,860 0.13 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_A2,8 Lung Primary cancer 1,169 0.18 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A2,9 Lung Primary cancer 3,898 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A3,1 Lung Primary cancer 2,563 0.31 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A3,10 Lung Primary cancer 3,551 0.18 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A3,11 Lung Primary cancer 1,855 0.22 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A3,12 Lung Primary cancer 2,749 0.30 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A3,13 Lung Primary cancer 2,710 0.38 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_A3,14 Lung Primary cancer 2,364 0.32 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A3,16 Lung Primary cancer 3,270 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A3,2 Lung Primary cancer 2,814 0.09 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_A3,3 Lung Primary cancer 3,654 0.22 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A3,4 Lung Primary cancer 3,733 0.18 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A3,6 Lung Primary cancer 1,653 0.38 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_A3,7 Lung Primary cancer 3,220 0.16 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A3,8 Lung Primary cancer 2,029 0.41 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_A3,9 Lung Primary cancer 2,418 0.32 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A4,1 Lung Primary cancer 2,500 0.16 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A4,10 Lung Primary cancer 3,599 0.45 0.17 Highly modular Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__88_A2,6 Lung Primary cancer 3,461 0.30 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A2,7 Lung Primary cancer 1,860 0.13 0.13 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_A2,8 Lung Primary cancer 1,169 0.20 0.15 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A2,9 Lung Primary cancer 3,898 0.26 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A3,1 Lung Primary cancer 2,563 0.31 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A3,10 Lung Primary cancer 3,551 0.18 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A3,11 Lung Primary cancer 1,855 0.22 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A3,12 Lung Primary cancer 2,749 0.31 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A3,13 Lung Primary cancer 2,710 0.38 0.10 Highly modular Weakly segregated
NSCLC_38242124__IMC__88_A3,14 Lung Primary cancer 2,364 0.32 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A3,16 Lung Primary cancer 3,270 0.25 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A3,2 Lung Primary cancer 2,814 0.09 0.14 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_A3,3 Lung Primary cancer 3,654 0.22 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A3,4 Lung Primary cancer 3,733 0.18 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A3,6 Lung Primary cancer 1,653 0.38 0.09 Highly modular Weakly segregated
NSCLC_38242124__IMC__88_A3,7 Lung Primary cancer 3,220 0.17 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A3,8 Lung Primary cancer 2,029 0.41 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_A3,9 Lung Primary cancer 2,418 0.31 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A4,1 Lung Primary cancer 2,500 0.17 0.14 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A4,10 Lung Primary cancer 3,599 0.45 0.12 Highly modular Weakly segregated