scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__175_B2,3 Lung Primary cancer 4,979 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B2,4 Lung Primary cancer 3,269 0.38 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__175_B2,5 Lung Primary cancer 3,929 0.04 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B2,6 Lung Primary cancer 3,446 0.29 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B2,7 Lung Primary cancer 3,595 0.02 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B2,8 Lung Primary cancer 2,386 0.30 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B2,9 Lung Primary cancer 4,016 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B3,1 Lung Primary cancer 3,874 0.15 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B3,10 Lung Primary cancer 1,896 0.20 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B3,11 Lung Primary cancer 2,889 0.06 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B3,12 Lung Primary cancer 4,330 0.29 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B3,13 Lung Primary cancer 912 0.20 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B3,15 Lung Primary cancer 2,727 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B3,16 Lung Primary cancer 4,456 0.33 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B3,17 Lung Primary cancer 2,318 0.33 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B3,2 Lung Primary cancer 3,084 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B3,3 Lung Primary cancer 4,329 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B3,4 Lung Primary cancer 1,576 0.16 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B3,5 Lung Primary cancer 3,081 0.31 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B3,6 Lung Primary cancer 3,664 0.30 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__175_B2,3 Lung Primary cancer 4,979 0.18 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B2,4 Lung Primary cancer 3,269 0.38 0.23 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__175_B2,5 Lung Primary cancer 3,929 0.04 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B2,6 Lung Primary cancer 3,446 0.30 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B2,7 Lung Primary cancer 3,595 0.02 0.15 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B2,8 Lung Primary cancer 2,386 0.30 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B2,9 Lung Primary cancer 4,016 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B3,1 Lung Primary cancer 3,874 0.15 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B3,10 Lung Primary cancer 1,896 0.20 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B3,11 Lung Primary cancer 2,889 0.06 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_B3,12 Lung Primary cancer 4,330 0.29 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B3,13 Lung Primary cancer 912 0.20 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B3,15 Lung Primary cancer 2,727 0.17 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B3,16 Lung Primary cancer 4,456 0.39 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__175_B3,17 Lung Primary cancer 2,318 0.35 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B3,2 Lung Primary cancer 3,084 0.18 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B3,3 Lung Primary cancer 4,329 0.18 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B3,4 Lung Primary cancer 1,576 0.16 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B3,5 Lung Primary cancer 3,081 0.31 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B3,6 Lung Primary cancer 3,664 0.30 0.17 Weakly structured Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__175_B2,3 Lung Primary cancer 4,979 0.18 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B2,4 Lung Primary cancer 3,269 0.38 0.18 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__175_B2,5 Lung Primary cancer 3,929 0.04 0.16 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B2,6 Lung Primary cancer 3,446 0.30 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B2,7 Lung Primary cancer 3,595 0.02 0.13 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_B2,8 Lung Primary cancer 2,386 0.31 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B2,9 Lung Primary cancer 4,016 0.24 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B3,1 Lung Primary cancer 3,874 0.15 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B3,10 Lung Primary cancer 1,896 0.21 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B3,11 Lung Primary cancer 2,889 0.06 0.07 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_B3,12 Lung Primary cancer 4,330 0.29 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B3,13 Lung Primary cancer 912 0.22 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B3,15 Lung Primary cancer 2,727 0.17 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B3,16 Lung Primary cancer 4,456 0.40 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__175_B3,17 Lung Primary cancer 2,318 0.35 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B3,2 Lung Primary cancer 3,084 0.18 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B3,3 Lung Primary cancer 4,329 0.18 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B3,4 Lung Primary cancer 1,576 0.16 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B3,5 Lung Primary cancer 3,081 0.31 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B3,6 Lung Primary cancer 3,664 0.30 0.13 Weakly structured Weakly segregated