scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Spatial Domain

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Spatial Domain (Tier 1)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__88_A4,11 Lung Primary cancer 2,207 Stromal 27.2% 0.90 0.29
NSCLC_38242124__IMC__88_A4,12 Lung Primary cancer 3,092 Tumor/Malignant 61.2% 0.97 0.13
NSCLC_38242124__IMC__88_A4,13 Lung Primary cancer 2,399 Tumor/Malignant 69.7% 0.93 0.16
NSCLC_38242124__IMC__88_A4,14 Lung Primary cancer 1,431 Stromal 48.6% 0.92 0.25
NSCLC_38242124__IMC__88_A4,15 Lung Primary cancer 3,532 Tumor/Malignant 46.5% 0.94 0.17
NSCLC_38242124__IMC__88_A4,16 Lung Primary cancer 2,852 Tumor/Malignant 88.0% 0.99 0.04
NSCLC_38242124__IMC__88_A4,2 Lung Primary cancer 6,729 Tumor/Malignant 38.8% 0.92 0.22
NSCLC_38242124__IMC__88_A4,3 Lung Primary cancer 3,108 Stromal 28.3% 0.35 1.01
NSCLC_38242124__IMC__88_A4,4 Lung Primary cancer 3,072 Tumor/Malignant 94.0% 0.99 0.03
NSCLC_38242124__IMC__88_A4,7 Lung Primary cancer 2,900 Immune 53.3% 0.99 0.06
NSCLC_38242124__IMC__88_A4,8 Lung Primary cancer 2,901 Tumor/Malignant 52.0% 0.97 0.11
NSCLC_38242124__IMC__88_A4,9 Lung Primary cancer 3,469 Tumor/Malignant 30.7% 0.92 0.28
NSCLC_38242124__IMC__88_A5,1 Lung Primary cancer 2,324 Tumor/Malignant 85.2% 1.00 0.02
NSCLC_38242124__IMC__88_A5,10 Lung Primary cancer 2,995 Tumor/Malignant 59.6% 0.98 0.08
NSCLC_38242124__IMC__88_A5,11 Lung Primary cancer 4,081 Tumor/Malignant 78.1% 0.98 0.09
NSCLC_38242124__IMC__88_A5,12 Lung Primary cancer 2,371 Tumor/Malignant 49.8% 0.99 0.04
NSCLC_38242124__IMC__88_A5,13 Lung Primary cancer 2,420 Stromal 34.0% 0.89 0.30
NSCLC_38242124__IMC__88_A5,14 Lung Primary cancer 3,717 Immune 39.0% 0.93 0.21
NSCLC_38242124__IMC__88_A5,15 Lung Primary cancer 3,147 Tumor/Malignant 40.8% 0.75 0.58
NSCLC_38242124__IMC__88_A5,16 Lung Primary cancer 4,423 Tumor/Malignant 59.0% 0.99 0.03

Spatial Domain (Tier 2)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__88_A4,11 Lung Primary cancer 2,207 Stromal 25.3% 0.89 0.26
NSCLC_38242124__IMC__88_A4,12 Lung Primary cancer 3,092 Tumor/Malignant 49.3% 0.98 0.08
NSCLC_38242124__IMC__88_A4,13 Lung Primary cancer 2,399 Tumor/Malignant 69.4% 0.93 0.15
NSCLC_38242124__IMC__88_A4,14 Lung Primary cancer 1,431 Stromal 32.0% 0.98 0.11
NSCLC_38242124__IMC__88_A4,15 Lung Primary cancer 3,532 Tumor/Malignant 46.5% 0.94 0.17
NSCLC_38242124__IMC__88_A4,16 Lung Primary cancer 2,852 Tumor/Malignant 87.4% 0.99 0.03
NSCLC_38242124__IMC__88_A4,2 Lung Primary cancer 6,729 Tumor/Malignant 36.2% 0.94 0.20
NSCLC_38242124__IMC__88_A4,3 Lung Primary cancer 3,108 Stromal 25.3% 0.37 1.08
NSCLC_38242124__IMC__88_A4,4 Lung Primary cancer 3,072 Tumor/Malignant 90.8% 1.00 0.01
NSCLC_38242124__IMC__88_A4,7 Lung Primary cancer 2,900 Myeloid 38.6% 0.94 0.21
NSCLC_38242124__IMC__88_A4,8 Lung Primary cancer 2,901 Tumor/Malignant 42.4% 1.00 0.03
NSCLC_38242124__IMC__88_A4,9 Lung Primary cancer 3,469 Tumor/Malignant 27.4% 0.95 0.22
NSCLC_38242124__IMC__88_A5,1 Lung Primary cancer 2,324 Tumor/Malignant 84.9% 0.99 0.03
NSCLC_38242124__IMC__88_A5,10 Lung Primary cancer 2,995 Tumor/Malignant 58.4% 0.99 0.07
NSCLC_38242124__IMC__88_A5,11 Lung Primary cancer 4,081 Tumor/Malignant 70.4% 0.99 0.05
NSCLC_38242124__IMC__88_A5,12 Lung Primary cancer 2,371 Tumor/Malignant 49.8% 0.99 0.04
NSCLC_38242124__IMC__88_A5,13 Lung Primary cancer 2,420 Stromal 35.2% 0.89 0.32
NSCLC_38242124__IMC__88_A5,14 Lung Primary cancer 3,717 Lymphoid 36.6% 0.90 0.30
NSCLC_38242124__IMC__88_A5,15 Lung Primary cancer 3,147 Tumor/Malignant 55.5% 0.92 0.25
NSCLC_38242124__IMC__88_A5,16 Lung Primary cancer 4,423 Tumor/Malignant 59.5% 0.99 0.04

Spatial Domain (Tier 3)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__88_A4,11 Lung Primary cancer 2,207 Fibroblast 25.6% 0.80 0.42
NSCLC_38242124__IMC__88_A4,12 Lung Primary cancer 3,092 Tumor/Malignant cell 60.9% 0.97 0.14
NSCLC_38242124__IMC__88_A4,13 Lung Primary cancer 2,399 Tumor/Malignant cell 70.0% 0.93 0.16
NSCLC_38242124__IMC__88_A4,14 Lung Primary cancer 1,431 Fibroblast 45.2% 0.91 0.27
NSCLC_38242124__IMC__88_A4,15 Lung Primary cancer 3,532 Tumor/Malignant cell 47.5% 0.93 0.19
NSCLC_38242124__IMC__88_A4,16 Lung Primary cancer 2,852 Tumor/Malignant cell 87.6% 0.99 0.03
NSCLC_38242124__IMC__88_A4,2 Lung Primary cancer 6,729 Tumor/Malignant cell 36.9% 0.93 0.20
NSCLC_38242124__IMC__88_A4,3 Lung Primary cancer 3,108 Myeloid cell, unspecified 22.9% 0.67 0.79
NSCLC_38242124__IMC__88_A4,4 Lung Primary cancer 3,072 Tumor/Malignant cell 94.2% 0.99 0.03
NSCLC_38242124__IMC__88_A4,7 Lung Primary cancer 2,900 Myeloid cell, unspecified 55.2% 0.90 0.28
NSCLC_38242124__IMC__88_A4,8 Lung Primary cancer 2,901 Tumor/Malignant cell 51.5% 0.97 0.11
NSCLC_38242124__IMC__88_A4,9 Lung Primary cancer 3,469 Tumor/Malignant cell 32.6% 0.91 0.32
NSCLC_38242124__IMC__88_A5,1 Lung Primary cancer 2,324 Tumor/Malignant cell 88.7% 0.99 0.04
NSCLC_38242124__IMC__88_A5,10 Lung Primary cancer 2,995 Tumor/Malignant cell 67.1% 0.96 0.13
NSCLC_38242124__IMC__88_A5,11 Lung Primary cancer 4,081 Tumor/Malignant cell 74.8% 0.98 0.07
NSCLC_38242124__IMC__88_A5,12 Lung Primary cancer 2,371 Tumor/Malignant cell 60.2% 0.97 0.12
NSCLC_38242124__IMC__88_A5,13 Lung Primary cancer 2,420 Fibroblast 26.8% 0.88 0.34
NSCLC_38242124__IMC__88_A5,14 Lung Primary cancer 3,717 B cell 37.3% 0.47 0.71
NSCLC_38242124__IMC__88_A5,15 Lung Primary cancer 3,147 Tumor/Malignant cell 64.6% 0.90 0.29
NSCLC_38242124__IMC__88_A5,16 Lung Primary cancer 4,423 Tumor/Malignant cell 68.1% 0.97 0.11