scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__88_A4,11 Lung Primary cancer 2,207 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A4,12 Lung Primary cancer 3,092 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A4,13 Lung Primary cancer 2,399 0.33 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A4,14 Lung Primary cancer 1,431 0.16 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A4,15 Lung Primary cancer 3,532 0.38 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_A4,16 Lung Primary cancer 2,852 0.11 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_A4,2 Lung Primary cancer 6,729 0.14 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_A4,3 Lung Primary cancer 3,108 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A4,4 Lung Primary cancer 3,072 0.04 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_A4,7 Lung Primary cancer 2,900 0.16 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A4,8 Lung Primary cancer 2,901 0.36 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_A4,9 Lung Primary cancer 3,469 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A5,1 Lung Primary cancer 2,324 0.06 0.26 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_A5,10 Lung Primary cancer 2,995 0.32 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A5,11 Lung Primary cancer 4,081 0.09 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_A5,12 Lung Primary cancer 2,371 0.14 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_A5,13 Lung Primary cancer 2,420 0.15 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A5,14 Lung Primary cancer 3,717 0.32 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A5,15 Lung Primary cancer 3,147 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A5,16 Lung Primary cancer 4,423 0.32 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__88_A4,11 Lung Primary cancer 2,207 0.27 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A4,12 Lung Primary cancer 3,092 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A4,13 Lung Primary cancer 2,399 0.33 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A4,14 Lung Primary cancer 1,431 0.16 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A4,15 Lung Primary cancer 3,532 0.38 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_A4,16 Lung Primary cancer 2,852 0.11 0.19 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_A4,2 Lung Primary cancer 6,729 0.14 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_A4,3 Lung Primary cancer 3,108 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A4,4 Lung Primary cancer 3,072 0.04 0.06 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_A4,7 Lung Primary cancer 2,900 0.17 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A4,8 Lung Primary cancer 2,901 0.36 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_A4,9 Lung Primary cancer 3,469 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A5,1 Lung Primary cancer 2,324 0.06 0.18 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_A5,10 Lung Primary cancer 2,995 0.32 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A5,11 Lung Primary cancer 4,081 0.09 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_A5,12 Lung Primary cancer 2,371 0.14 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_A5,13 Lung Primary cancer 2,420 0.15 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A5,14 Lung Primary cancer 3,717 0.33 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A5,15 Lung Primary cancer 3,147 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A5,16 Lung Primary cancer 4,423 0.32 0.17 Weakly structured Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__88_A4,11 Lung Primary cancer 2,207 0.27 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A4,12 Lung Primary cancer 3,092 0.25 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A4,13 Lung Primary cancer 2,399 0.33 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A4,14 Lung Primary cancer 1,431 0.17 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A4,15 Lung Primary cancer 3,532 0.38 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__88_A4,16 Lung Primary cancer 2,852 0.11 0.16 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_A4,2 Lung Primary cancer 6,729 0.14 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_A4,3 Lung Primary cancer 3,108 0.25 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A4,4 Lung Primary cancer 3,072 0.04 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_A4,7 Lung Primary cancer 2,900 0.17 0.15 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A4,8 Lung Primary cancer 2,901 0.36 0.13 Highly modular Weakly segregated
NSCLC_38242124__IMC__88_A4,9 Lung Primary cancer 3,469 0.24 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A5,1 Lung Primary cancer 2,324 0.06 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_A5,10 Lung Primary cancer 2,995 0.32 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A5,11 Lung Primary cancer 4,081 0.09 0.08 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_A5,12 Lung Primary cancer 2,371 0.14 0.18 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_A5,13 Lung Primary cancer 2,420 0.19 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A5,14 Lung Primary cancer 3,717 0.35 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A5,15 Lung Primary cancer 3,147 0.24 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A5,16 Lung Primary cancer 4,423 0.32 0.11 Weakly structured Weakly segregated