scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Spatial Domain

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Spatial Domain (Tier 1)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__88_A5,2 Lung Primary cancer 4,071 Tumor/Malignant 34.7% 0.48 0.87
NSCLC_38242124__IMC__88_A5,3 Lung Primary cancer 4,953 Immune 35.5% 0.92 0.23
NSCLC_38242124__IMC__88_A5,4 Lung Primary cancer 2,985 Stromal 37.8% 0.85 0.41
NSCLC_38242124__IMC__88_A5,5 Lung Primary cancer 1,331 Stromal 27.8% 0.61 0.79
NSCLC_38242124__IMC__88_A5,6 Lung Primary cancer 2,916 Immune 49.9% 1.00 0.02
NSCLC_38242124__IMC__88_A5,8 Lung Primary cancer 4,174 Tumor/Malignant 36.7% 0.76 0.53
NSCLC_38242124__IMC__88_A5,9 Lung Primary cancer 2,590 Tumor/Malignant 80.8% 0.98 0.07
NSCLC_38242124__IMC__88_A6,1 Lung Primary cancer 4,214 Tumor/Malignant 43.1% 0.99 0.04
NSCLC_38242124__IMC__88_A6,10 Lung Primary cancer 2,671 Tumor/Malignant 72.0% 0.98 0.09
NSCLC_38242124__IMC__88_A6,11 Lung Primary cancer 3,657 Tumor/Malignant 68.9% 1.00 0.02
NSCLC_38242124__IMC__88_A6,12 Lung Primary cancer 3,303 Tumor/Malignant 47.8% 0.96 0.18
NSCLC_38242124__IMC__88_A6,13 Lung Primary cancer 816 Stromal 33.6% 0.85 0.42
NSCLC_38242124__IMC__88_A6,15 Lung Primary cancer 3,624 Tumor/Malignant 32.1% 0.91 0.28
NSCLC_38242124__IMC__88_A6,16 Lung Primary cancer 3,966 Tumor/Malignant 43.1% 0.96 0.15
NSCLC_38242124__IMC__88_A6,3 Lung Primary cancer 4,381 Tumor/Malignant 60.7% 0.98 0.09
NSCLC_38242124__IMC__88_A6,4 Lung Primary cancer 2,808 Stromal 29.1% 0.95 0.21
NSCLC_38242124__IMC__88_A6,5 Lung Primary cancer 3,515 Tumor/Malignant 38.9% 0.99 0.05
NSCLC_38242124__IMC__88_A6,6 Lung Primary cancer 1,767 Other 22.4% 0.45 0.92
NSCLC_38242124__IMC__88_A6,8 Lung Primary cancer 3,256 Tumor/Malignant 44.1% 0.94 0.16
NSCLC_38242124__IMC__88_A6,9 Lung Primary cancer 3,337 Tumor/Malignant 82.4% 0.99 0.05

Spatial Domain (Tier 2)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__88_A5,2 Lung Primary cancer 4,071 Tumor/Malignant 29.9% 0.50 0.87
NSCLC_38242124__IMC__88_A5,3 Lung Primary cancer 4,953 Lymphoid 30.8% 0.92 0.24
NSCLC_38242124__IMC__88_A5,4 Lung Primary cancer 2,985 Stromal 25.8% 0.90 0.31
NSCLC_38242124__IMC__88_A5,5 Lung Primary cancer 1,331 Other 24.1% 0.38 0.97
NSCLC_38242124__IMC__88_A5,6 Lung Primary cancer 2,916 Lymphoid 45.6% 0.99 0.03
NSCLC_38242124__IMC__88_A5,8 Lung Primary cancer 4,174 Tumor/Malignant 39.8% 0.97 0.13
NSCLC_38242124__IMC__88_A5,9 Lung Primary cancer 2,590 Tumor/Malignant 81.0% 0.98 0.07
NSCLC_38242124__IMC__88_A6,1 Lung Primary cancer 4,214 Tumor/Malignant 43.8% 0.97 0.14
NSCLC_38242124__IMC__88_A6,10 Lung Primary cancer 2,671 Tumor/Malignant 52.0% 0.98 0.08
NSCLC_38242124__IMC__88_A6,11 Lung Primary cancer 3,657 Tumor/Malignant 75.0% 0.99 0.06
NSCLC_38242124__IMC__88_A6,12 Lung Primary cancer 3,303 Tumor/Malignant 42.4% 0.98 0.12
NSCLC_38242124__IMC__88_A6,13 Lung Primary cancer 816 Stromal 30.9% 0.85 0.38
NSCLC_38242124__IMC__88_A6,15 Lung Primary cancer 3,624 Tumor/Malignant 29.4% 0.92 0.24
NSCLC_38242124__IMC__88_A6,16 Lung Primary cancer 3,966 Tumor/Malignant 53.7% 0.93 0.23
NSCLC_38242124__IMC__88_A6,3 Lung Primary cancer 4,381 Tumor/Malignant 53.8% 0.98 0.09
NSCLC_38242124__IMC__88_A6,4 Lung Primary cancer 2,808 Tumor/Malignant 43.3% 0.88 0.37
NSCLC_38242124__IMC__88_A6,5 Lung Primary cancer 3,515 Tumor/Malignant 56.4% 0.93 0.19
NSCLC_38242124__IMC__88_A6,6 Lung Primary cancer 1,767 Tumor/Malignant 21.2% 0.34 1.13
NSCLC_38242124__IMC__88_A6,8 Lung Primary cancer 3,256 Tumor/Malignant 45.6% 0.94 0.18
NSCLC_38242124__IMC__88_A6,9 Lung Primary cancer 3,337 Tumor/Malignant 60.0% 0.99 0.03

Spatial Domain (Tier 3)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__88_A5,2 Lung Primary cancer 4,071 Tumor/Malignant cell 31.6% 0.82 0.42
NSCLC_38242124__IMC__88_A5,3 Lung Primary cancer 4,953 B cell 35.2% 0.47 0.71
NSCLC_38242124__IMC__88_A5,4 Lung Primary cancer 2,985 Fibroblast 39.0% 0.83 0.44
NSCLC_38242124__IMC__88_A5,5 Lung Primary cancer 1,331 Fibroblast 26.1% 0.57 0.84
NSCLC_38242124__IMC__88_A5,6 Lung Primary cancer 2,916 B cell 37.6% 0.90 0.32
NSCLC_38242124__IMC__88_A5,8 Lung Primary cancer 4,174 Tumor/Malignant cell 66.2% 0.88 0.30
NSCLC_38242124__IMC__88_A5,9 Lung Primary cancer 2,590 Tumor/Malignant cell 81.0% 0.98 0.07
NSCLC_38242124__IMC__88_A6,1 Lung Primary cancer 4,214 Tumor/Malignant cell 56.1% 0.95 0.18
NSCLC_38242124__IMC__88_A6,10 Lung Primary cancer 2,671 Tumor/Malignant cell 71.5% 0.98 0.09
NSCLC_38242124__IMC__88_A6,11 Lung Primary cancer 3,657 Tumor/Malignant cell 79.1% 0.97 0.09
NSCLC_38242124__IMC__88_A6,12 Lung Primary cancer 3,303 Tumor/Malignant cell 47.8% 0.96 0.18
NSCLC_38242124__IMC__88_A6,13 Lung Primary cancer 816 Fibroblast 35.5% 0.79 0.50
NSCLC_38242124__IMC__88_A6,15 Lung Primary cancer 3,624 Tumor/Malignant cell 33.9% 0.90 0.32
NSCLC_38242124__IMC__88_A6,16 Lung Primary cancer 3,966 Tumor/Malignant cell 53.4% 0.93 0.23
NSCLC_38242124__IMC__88_A6,3 Lung Primary cancer 4,381 Tumor/Malignant cell 62.0% 0.98 0.11
NSCLC_38242124__IMC__88_A6,4 Lung Primary cancer 2,808 Tumor/Malignant cell 44.8% 0.87 0.39
NSCLC_38242124__IMC__88_A6,5 Lung Primary cancer 3,515 Tumor/Malignant cell 55.8% 0.94 0.18
NSCLC_38242124__IMC__88_A6,6 Lung Primary cancer 1,767 T cell 23.3% 0.27 1.19
NSCLC_38242124__IMC__88_A6,8 Lung Primary cancer 3,256 Tumor/Malignant cell 45.7% 0.94 0.18
NSCLC_38242124__IMC__88_A6,9 Lung Primary cancer 3,337 Tumor/Malignant cell 82.8% 0.99 0.05