scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__88_A5,2 Lung Primary cancer 4,071 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A5,3 Lung Primary cancer 4,953 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A5,4 Lung Primary cancer 2,985 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A5,5 Lung Primary cancer 1,331 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A5,6 Lung Primary cancer 2,916 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A5,8 Lung Primary cancer 4,174 0.30 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A5,9 Lung Primary cancer 2,590 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A6,1 Lung Primary cancer 4,214 0.38 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_A6,10 Lung Primary cancer 2,671 0.14 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_A6,11 Lung Primary cancer 3,657 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A6,12 Lung Primary cancer 3,303 0.33 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A6,13 Lung Primary cancer 816 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A6,15 Lung Primary cancer 3,624 0.31 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A6,16 Lung Primary cancer 3,966 0.20 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A6,3 Lung Primary cancer 4,381 0.39 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_A6,4 Lung Primary cancer 2,808 0.30 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A6,5 Lung Primary cancer 3,515 0.39 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_A6,6 Lung Primary cancer 1,767 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A6,8 Lung Primary cancer 3,256 0.39 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_A6,9 Lung Primary cancer 3,337 0.18 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__88_A5,2 Lung Primary cancer 4,071 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A5,3 Lung Primary cancer 4,953 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A5,4 Lung Primary cancer 2,985 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A5,5 Lung Primary cancer 1,331 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A5,6 Lung Primary cancer 2,916 0.20 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A5,8 Lung Primary cancer 4,174 0.30 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A5,9 Lung Primary cancer 2,590 0.23 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A6,1 Lung Primary cancer 4,214 0.38 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_A6,10 Lung Primary cancer 2,671 0.14 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_A6,11 Lung Primary cancer 3,657 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A6,12 Lung Primary cancer 3,303 0.33 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A6,13 Lung Primary cancer 816 0.18 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A6,15 Lung Primary cancer 3,624 0.35 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_A6,16 Lung Primary cancer 3,966 0.20 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A6,3 Lung Primary cancer 4,381 0.39 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_A6,4 Lung Primary cancer 2,808 0.30 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A6,5 Lung Primary cancer 3,515 0.39 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_A6,6 Lung Primary cancer 1,767 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A6,8 Lung Primary cancer 3,256 0.39 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_A6,9 Lung Primary cancer 3,337 0.18 0.17 Weakly structured Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__88_A5,2 Lung Primary cancer 4,071 0.21 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A5,3 Lung Primary cancer 4,953 0.25 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A5,4 Lung Primary cancer 2,985 0.26 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A5,5 Lung Primary cancer 1,331 0.26 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A5,6 Lung Primary cancer 2,916 0.25 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A5,8 Lung Primary cancer 4,174 0.30 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A5,9 Lung Primary cancer 2,590 0.23 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A6,1 Lung Primary cancer 4,214 0.38 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__88_A6,10 Lung Primary cancer 2,671 0.14 0.13 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_A6,11 Lung Primary cancer 3,657 0.24 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A6,12 Lung Primary cancer 3,303 0.33 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A6,13 Lung Primary cancer 816 0.20 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A6,15 Lung Primary cancer 3,624 0.35 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__88_A6,16 Lung Primary cancer 3,966 0.20 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A6,3 Lung Primary cancer 4,381 0.39 0.08 Highly modular Weakly segregated
NSCLC_38242124__IMC__88_A6,4 Lung Primary cancer 2,808 0.30 0.15 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A6,5 Lung Primary cancer 3,515 0.39 0.13 Highly modular Weakly segregated
NSCLC_38242124__IMC__88_A6,6 Lung Primary cancer 1,767 0.21 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A6,8 Lung Primary cancer 3,256 0.40 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__88_A6,9 Lung Primary cancer 3,337 0.18 0.11 Weakly structured Weakly segregated