scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Spatial Domain

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Spatial Domain (Tier 1)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__88_A7,1 Lung Primary cancer 3,240 Stromal 26.5% 0.80 0.53
NSCLC_38242124__IMC__88_A7,10 Lung Primary cancer 2,113 Tumor/Malignant 53.7% 0.93 0.22
NSCLC_38242124__IMC__88_A7,11 Lung Primary cancer 3,179 Tumor/Malignant 50.0% 0.99 0.05
NSCLC_38242124__IMC__88_A7,12 Lung Primary cancer 861 Stromal 28.5% 0.69 0.72
NSCLC_38242124__IMC__88_A7,13 Lung Primary cancer 3,282 Tumor/Malignant 42.5% 0.95 0.23
NSCLC_38242124__IMC__88_A7,14 Lung Primary cancer 1,858 Stromal 39.3% 0.79 0.49
NSCLC_38242124__IMC__88_A7,15 Lung Primary cancer 3,912 Tumor/Malignant 46.1% 0.93 0.21
NSCLC_38242124__IMC__88_A7,16 Lung Primary cancer 3,866 Tumor/Malignant 59.4% 0.94 0.18
NSCLC_38242124__IMC__88_A7,2 Lung Primary cancer 2,931 Tumor/Malignant 35.0% 0.83 0.46
NSCLC_38242124__IMC__88_A7,3 Lung Primary cancer 3,583 Tumor/Malignant 55.3% 0.96 0.13
NSCLC_38242124__IMC__88_A7,4 Lung Primary cancer 2,848 Stromal 35.4% 0.99 0.06
NSCLC_38242124__IMC__88_A7,5 Lung Primary cancer 2,444 Tumor/Malignant 57.0% 0.94 0.15
NSCLC_38242124__IMC__88_A7,6 Lung Primary cancer 4,004 Tumor/Malignant 71.9% 0.97 0.11
NSCLC_38242124__IMC__88_A7,7 Lung Primary cancer 3,483 Tumor/Malignant 81.7% 0.98 0.08
NSCLC_38242124__IMC__88_A7,8 Lung Primary cancer 3,840 Tumor/Malignant 92.0% 0.99 0.03
NSCLC_38242124__IMC__88_A7,9 Lung Primary cancer 2,058 Other 31.5% 0.58 0.74
NSCLC_38242124__IMC__88_A8,1 Lung Primary cancer 3,439 Tumor/Malignant 33.0% 0.95 0.17
NSCLC_38242124__IMC__88_A8,10 Lung Primary cancer 2,277 Tumor/Malignant 43.0% 1.00 0.04
NSCLC_38242124__IMC__88_A8,11 Lung Primary cancer 2,263 Tumor/Malignant 46.6% 0.92 0.31
NSCLC_38242124__IMC__88_A8,12 Lung Primary cancer 2,130 Stromal 41.2% 0.52 0.91

Spatial Domain (Tier 2)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__88_A7,1 Lung Primary cancer 3,240 Tumor/Malignant 21.5% 0.93 0.25
NSCLC_38242124__IMC__88_A7,10 Lung Primary cancer 2,113 Tumor/Malignant 34.0% 1.00 0.05
NSCLC_38242124__IMC__88_A7,11 Lung Primary cancer 3,179 Tumor/Malignant 53.4% 0.99 0.07
NSCLC_38242124__IMC__88_A7,12 Lung Primary cancer 861 Other 25.4% 0.38 1.01
NSCLC_38242124__IMC__88_A7,13 Lung Primary cancer 3,282 Tumor/Malignant 34.8% 0.76 0.60
NSCLC_38242124__IMC__88_A7,14 Lung Primary cancer 1,858 Stromal 39.9% 0.99 0.07
NSCLC_38242124__IMC__88_A7,15 Lung Primary cancer 3,912 Tumor/Malignant 41.9% 0.95 0.17
NSCLC_38242124__IMC__88_A7,16 Lung Primary cancer 3,866 Tumor/Malignant 56.0% 0.95 0.15
NSCLC_38242124__IMC__88_A7,2 Lung Primary cancer 2,931 Tumor/Malignant 24.6% 0.90 0.33
NSCLC_38242124__IMC__88_A7,3 Lung Primary cancer 3,583 Tumor/Malignant 38.2% 0.96 0.12
NSCLC_38242124__IMC__88_A7,4 Lung Primary cancer 2,848 Stromal 35.2% 0.99 0.07
NSCLC_38242124__IMC__88_A7,5 Lung Primary cancer 2,444 Tumor/Malignant 52.0% 0.97 0.10
NSCLC_38242124__IMC__88_A7,6 Lung Primary cancer 4,004 Tumor/Malignant 67.0% 0.98 0.08
NSCLC_38242124__IMC__88_A7,7 Lung Primary cancer 3,483 Tumor/Malignant 73.6% 0.99 0.03
NSCLC_38242124__IMC__88_A7,8 Lung Primary cancer 3,840 Tumor/Malignant 89.6% 1.00 0.02
NSCLC_38242124__IMC__88_A7,9 Lung Primary cancer 2,058 Other 30.6% 0.34 1.07
NSCLC_38242124__IMC__88_A8,1 Lung Primary cancer 3,439 Tumor/Malignant 29.0% 0.98 0.10
NSCLC_38242124__IMC__88_A8,10 Lung Primary cancer 2,277 Tumor/Malignant 45.9% 0.99 0.06
NSCLC_38242124__IMC__88_A8,11 Lung Primary cancer 2,263 Tumor/Malignant 50.2% 0.76 0.58
NSCLC_38242124__IMC__88_A8,12 Lung Primary cancer 2,130 Stromal 37.6% 0.53 0.93

Spatial Domain (Tier 3)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__88_A7,1 Lung Primary cancer 3,240 Fibroblast 28.3% 0.70 0.67
NSCLC_38242124__IMC__88_A7,10 Lung Primary cancer 2,113 Tumor/Malignant cell 50.5% 0.94 0.20
NSCLC_38242124__IMC__88_A7,11 Lung Primary cancer 3,179 Tumor/Malignant cell 62.6% 0.97 0.14
NSCLC_38242124__IMC__88_A7,12 Lung Primary cancer 861 Fibroblast 19.4% 0.63 0.80
NSCLC_38242124__IMC__88_A7,13 Lung Primary cancer 3,282 Tumor/Malignant cell 47.1% 0.93 0.28
NSCLC_38242124__IMC__88_A7,14 Lung Primary cancer 1,858 Fibroblast 52.7% 0.92 0.23
NSCLC_38242124__IMC__88_A7,15 Lung Primary cancer 3,912 Tumor/Malignant cell 47.2% 0.93 0.23
NSCLC_38242124__IMC__88_A7,16 Lung Primary cancer 3,866 Tumor/Malignant cell 58.9% 0.94 0.18
NSCLC_38242124__IMC__88_A7,2 Lung Primary cancer 2,931 Tumor/Malignant cell 33.4% 0.85 0.45
NSCLC_38242124__IMC__88_A7,3 Lung Primary cancer 3,583 Tumor/Malignant cell 55.4% 0.96 0.13
NSCLC_38242124__IMC__88_A7,4 Lung Primary cancer 2,848 Fibroblast 57.6% 0.91 0.26
NSCLC_38242124__IMC__88_A7,5 Lung Primary cancer 2,444 Tumor/Malignant cell 57.7% 0.94 0.16
NSCLC_38242124__IMC__88_A7,6 Lung Primary cancer 4,004 Tumor/Malignant cell 67.3% 0.98 0.08
NSCLC_38242124__IMC__88_A7,7 Lung Primary cancer 3,483 Tumor/Malignant cell 81.9% 0.97 0.08
NSCLC_38242124__IMC__88_A7,8 Lung Primary cancer 3,840 Tumor/Malignant cell 92.1% 0.99 0.03
NSCLC_38242124__IMC__88_A7,9 Lung Primary cancer 2,058 Other 30.9% 0.34 1.12
NSCLC_38242124__IMC__88_A8,1 Lung Primary cancer 3,439 Tumor/Malignant cell 34.4% 0.95 0.19
NSCLC_38242124__IMC__88_A8,10 Lung Primary cancer 2,277 Tumor/Malignant cell 65.6% 0.94 0.20
NSCLC_38242124__IMC__88_A8,11 Lung Primary cancer 2,263 Tumor/Malignant cell 51.6% 0.90 0.36
NSCLC_38242124__IMC__88_A8,12 Lung Primary cancer 2,130 Fibroblast 36.1% 0.54 0.89