scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__88_A7,1 Lung Primary cancer 3,240 0.28 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A7,10 Lung Primary cancer 2,113 0.30 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A7,11 Lung Primary cancer 3,179 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A7,12 Lung Primary cancer 861 0.12 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_A7,13 Lung Primary cancer 3,282 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A7,14 Lung Primary cancer 1,858 0.08 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_A7,15 Lung Primary cancer 3,912 0.22 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A7,16 Lung Primary cancer 3,866 0.27 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A7,2 Lung Primary cancer 2,931 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A7,3 Lung Primary cancer 3,583 0.42 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_A7,4 Lung Primary cancer 2,848 0.09 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_A7,5 Lung Primary cancer 2,444 0.36 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_A7,6 Lung Primary cancer 4,004 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A7,7 Lung Primary cancer 3,483 0.19 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A7,8 Lung Primary cancer 3,840 0.09 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_A7,9 Lung Primary cancer 2,058 0.14 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_A8,1 Lung Primary cancer 3,439 0.38 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_A8,10 Lung Primary cancer 2,277 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A8,11 Lung Primary cancer 2,263 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A8,12 Lung Primary cancer 2,130 0.20 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__88_A7,1 Lung Primary cancer 3,240 0.28 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A7,10 Lung Primary cancer 2,113 0.30 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A7,11 Lung Primary cancer 3,179 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A7,12 Lung Primary cancer 861 0.14 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_A7,13 Lung Primary cancer 3,282 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A7,14 Lung Primary cancer 1,858 0.08 0.12 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_A7,15 Lung Primary cancer 3,912 0.23 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A7,16 Lung Primary cancer 3,866 0.27 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A7,2 Lung Primary cancer 2,931 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A7,3 Lung Primary cancer 3,583 0.42 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_A7,4 Lung Primary cancer 2,848 0.09 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_A7,5 Lung Primary cancer 2,444 0.36 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_A7,6 Lung Primary cancer 4,004 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A7,7 Lung Primary cancer 3,483 0.19 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A7,8 Lung Primary cancer 3,840 0.09 0.19 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_A7,9 Lung Primary cancer 2,058 0.14 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_A8,1 Lung Primary cancer 3,439 0.38 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_A8,10 Lung Primary cancer 2,277 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A8,11 Lung Primary cancer 2,263 0.18 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A8,12 Lung Primary cancer 2,130 0.20 0.17 Weakly structured Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__88_A7,1 Lung Primary cancer 3,240 0.29 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A7,10 Lung Primary cancer 2,113 0.30 0.14 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A7,11 Lung Primary cancer 3,179 0.26 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A7,12 Lung Primary cancer 861 0.14 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_A7,13 Lung Primary cancer 3,282 0.21 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A7,14 Lung Primary cancer 1,858 0.09 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_A7,15 Lung Primary cancer 3,912 0.23 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A7,16 Lung Primary cancer 3,866 0.27 0.14 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A7,2 Lung Primary cancer 2,931 0.25 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A7,3 Lung Primary cancer 3,583 0.42 0.13 Highly modular Weakly segregated
NSCLC_38242124__IMC__88_A7,4 Lung Primary cancer 2,848 0.10 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_A7,5 Lung Primary cancer 2,444 0.36 0.13 Highly modular Weakly segregated
NSCLC_38242124__IMC__88_A7,6 Lung Primary cancer 4,004 0.21 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A7,7 Lung Primary cancer 3,483 0.19 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A7,8 Lung Primary cancer 3,840 0.09 0.14 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_A7,9 Lung Primary cancer 2,058 0.14 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_A8,1 Lung Primary cancer 3,439 0.38 0.10 Highly modular Weakly segregated
NSCLC_38242124__IMC__88_A8,10 Lung Primary cancer 2,277 0.24 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A8,11 Lung Primary cancer 2,263 0.18 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A8,12 Lung Primary cancer 2,130 0.20 0.11 Weakly structured Weakly segregated