scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Spatial Domain

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Spatial Domain (Tier 1)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__88_A8,13 Lung Primary cancer 2,935 Tumor/Malignant 38.0% 0.52 0.73
NSCLC_38242124__IMC__88_A8,14 Lung Primary cancer 2,259 Tumor/Malignant 51.0% 0.95 0.18
NSCLC_38242124__IMC__88_A8,15 Lung Primary cancer 2,669 Tumor/Malignant 52.2% 0.95 0.18
NSCLC_38242124__IMC__88_A8,2 Lung Primary cancer 3,251 Tumor/Malignant 39.0% 0.94 0.20
NSCLC_38242124__IMC__88_A8,3 Lung Primary cancer 2,827 Tumor/Malignant 64.1% 0.98 0.09
NSCLC_38242124__IMC__88_A8,4 Lung Primary cancer 2,008 Stromal 34.3% 0.63 0.72
NSCLC_38242124__IMC__88_A8,5 Lung Primary cancer 2,592 Tumor/Malignant 40.7% 0.92 0.27
NSCLC_38242124__IMC__88_A8,6 Lung Primary cancer 952 Tumor/Malignant 68.4% 0.98 0.07
NSCLC_38242124__IMC__88_A8,7 Lung Primary cancer 3,087 Tumor/Malignant 78.1% 0.97 0.09
NSCLC_38242124__IMC__88_A8,8 Lung Primary cancer 3,789 Tumor/Malignant 87.0% 0.99 0.04
NSCLC_38242124__IMC__88_A8,9 Lung Primary cancer 2,808 Tumor/Malignant 76.3% 0.95 0.14
NSCLC_38242124__IMC__88_B1,1 Lung Primary cancer 4,170 Tumor/Malignant 49.8% 0.96 0.13
NSCLC_38242124__IMC__88_B1,10 Lung Primary cancer 3,178 Tumor/Malignant 63.2% 0.96 0.14
NSCLC_38242124__IMC__88_B1,11 Lung Primary cancer 8,194 Immune 48.0% 0.79 0.44
NSCLC_38242124__IMC__88_B1,12 Lung Primary cancer 2,767 Tumor/Malignant 64.5% 1.00 0.02
NSCLC_38242124__IMC__88_B1,14 Lung Primary cancer 3,280 Tumor/Malignant 38.0% 0.76 0.53
NSCLC_38242124__IMC__88_B1,15 Lung Primary cancer 2,914 Stromal 40.2% 0.97 0.11
NSCLC_38242124__IMC__88_B1,16 Lung Primary cancer 2,650 Tumor/Malignant 78.5% 0.99 0.03
NSCLC_38242124__IMC__88_B1,2 Lung Primary cancer 3,987 Tumor/Malignant 66.4% 0.94 0.19
NSCLC_38242124__IMC__88_B1,3 Lung Primary cancer 4,072 Immune 33.0% 0.45 0.86

Spatial Domain (Tier 2)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__88_A8,13 Lung Primary cancer 2,935 Tumor/Malignant 34.4% 0.64 0.68
NSCLC_38242124__IMC__88_A8,14 Lung Primary cancer 2,259 Tumor/Malignant 46.4% 0.96 0.13
NSCLC_38242124__IMC__88_A8,15 Lung Primary cancer 2,669 Tumor/Malignant 50.4% 0.96 0.16
NSCLC_38242124__IMC__88_A8,2 Lung Primary cancer 3,251 Tumor/Malignant 37.1% 0.95 0.17
NSCLC_38242124__IMC__88_A8,3 Lung Primary cancer 2,827 Tumor/Malignant 64.3% 0.98 0.10
NSCLC_38242124__IMC__88_A8,4 Lung Primary cancer 2,008 Tumor/Malignant 29.7% 0.96 0.12
NSCLC_38242124__IMC__88_A8,5 Lung Primary cancer 2,592 Tumor/Malignant 26.7% 0.70 0.67
NSCLC_38242124__IMC__88_A8,6 Lung Primary cancer 952 Tumor/Malignant 65.1% 0.98 0.06
NSCLC_38242124__IMC__88_A8,7 Lung Primary cancer 3,087 Tumor/Malignant 67.5% 1.00 0.03
NSCLC_38242124__IMC__88_A8,8 Lung Primary cancer 3,789 Tumor/Malignant 72.8% 0.99 0.03
NSCLC_38242124__IMC__88_A8,9 Lung Primary cancer 2,808 Tumor/Malignant 55.8% 0.99 0.04
NSCLC_38242124__IMC__88_B1,1 Lung Primary cancer 4,170 Tumor/Malignant 49.1% 0.97 0.12
NSCLC_38242124__IMC__88_B1,10 Lung Primary cancer 3,178 Tumor/Malignant 60.1% 0.98 0.11
NSCLC_38242124__IMC__88_B1,11 Lung Primary cancer 8,194 Myeloid 48.2% 0.79 0.44
NSCLC_38242124__IMC__88_B1,12 Lung Primary cancer 2,767 Tumor/Malignant 64.5% 1.00 0.02
NSCLC_38242124__IMC__88_B1,14 Lung Primary cancer 3,280 Tumor/Malignant 37.5% 0.76 0.53
NSCLC_38242124__IMC__88_B1,15 Lung Primary cancer 2,914 Stromal 38.1% 0.98 0.09
NSCLC_38242124__IMC__88_B1,16 Lung Primary cancer 2,650 Tumor/Malignant 79.3% 0.99 0.04
NSCLC_38242124__IMC__88_B1,2 Lung Primary cancer 3,987 Tumor/Malignant 45.6% 0.99 0.05
NSCLC_38242124__IMC__88_B1,3 Lung Primary cancer 4,072 Lymphoid 25.0% 0.33 1.02

Spatial Domain (Tier 3)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__88_A8,13 Lung Primary cancer 2,935 Tumor/Malignant cell 43.1% 0.91 0.35
NSCLC_38242124__IMC__88_A8,14 Lung Primary cancer 2,259 Tumor/Malignant cell 50.3% 0.96 0.17
NSCLC_38242124__IMC__88_A8,15 Lung Primary cancer 2,669 Tumor/Malignant cell 51.7% 0.95 0.18
NSCLC_38242124__IMC__88_A8,2 Lung Primary cancer 3,251 Tumor/Malignant cell 38.1% 0.95 0.19
NSCLC_38242124__IMC__88_A8,3 Lung Primary cancer 2,827 Tumor/Malignant cell 67.5% 0.97 0.12
NSCLC_38242124__IMC__88_A8,4 Lung Primary cancer 2,008 Fibroblast 32.2% 0.54 0.87
NSCLC_38242124__IMC__88_A8,5 Lung Primary cancer 2,592 Tumor/Malignant cell 40.2% 0.93 0.26
NSCLC_38242124__IMC__88_A8,6 Lung Primary cancer 952 Tumor/Malignant cell 72.0% 0.96 0.09
NSCLC_38242124__IMC__88_A8,7 Lung Primary cancer 3,087 Tumor/Malignant cell 80.4% 0.97 0.10
NSCLC_38242124__IMC__88_A8,8 Lung Primary cancer 3,789 Tumor/Malignant cell 88.2% 0.99 0.05
NSCLC_38242124__IMC__88_A8,9 Lung Primary cancer 2,808 Tumor/Malignant cell 76.6% 0.95 0.14
NSCLC_38242124__IMC__88_B1,1 Lung Primary cancer 4,170 Tumor/Malignant cell 49.6% 0.96 0.13
NSCLC_38242124__IMC__88_B1,10 Lung Primary cancer 3,178 Tumor/Malignant cell 63.4% 0.96 0.15
NSCLC_38242124__IMC__88_B1,11 Lung Primary cancer 8,194 Granulocyte 73.4% 0.91 0.24
NSCLC_38242124__IMC__88_B1,12 Lung Primary cancer 2,767 Tumor/Malignant cell 74.1% 0.98 0.09
NSCLC_38242124__IMC__88_B1,14 Lung Primary cancer 3,280 Tumor/Malignant cell 57.8% 0.93 0.21
NSCLC_38242124__IMC__88_B1,15 Lung Primary cancer 2,914 Fibroblast 41.9% 0.95 0.14
NSCLC_38242124__IMC__88_B1,16 Lung Primary cancer 2,650 Tumor/Malignant cell 79.3% 0.99 0.04
NSCLC_38242124__IMC__88_B1,2 Lung Primary cancer 3,987 Tumor/Malignant cell 65.4% 0.94 0.19
NSCLC_38242124__IMC__88_B1,3 Lung Primary cancer 4,072 Fibroblast 25.5% 0.68 0.72