scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__88_A8,13 Lung Primary cancer 2,935 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A8,14 Lung Primary cancer 2,259 0.33 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A8,15 Lung Primary cancer 2,669 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A8,2 Lung Primary cancer 3,251 0.41 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_A8,3 Lung Primary cancer 2,827 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A8,4 Lung Primary cancer 2,008 0.29 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A8,5 Lung Primary cancer 2,592 0.34 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A8,6 Lung Primary cancer 952 0.16 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A8,7 Lung Primary cancer 3,087 0.13 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_A8,8 Lung Primary cancer 3,789 0.13 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_A8,9 Lung Primary cancer 2,808 0.09 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_B1,1 Lung Primary cancer 4,170 0.42 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_B1,10 Lung Primary cancer 3,178 0.28 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B1,11 Lung Primary cancer 8,194 0.06 0.02 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_B1,12 Lung Primary cancer 2,767 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B1,14 Lung Primary cancer 3,280 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B1,15 Lung Primary cancer 2,914 0.37 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_B1,16 Lung Primary cancer 2,650 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B1,2 Lung Primary cancer 3,987 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B1,3 Lung Primary cancer 4,072 0.28 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__88_A8,13 Lung Primary cancer 2,935 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A8,14 Lung Primary cancer 2,259 0.33 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A8,15 Lung Primary cancer 2,669 0.23 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A8,2 Lung Primary cancer 3,251 0.44 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_A8,3 Lung Primary cancer 2,827 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A8,4 Lung Primary cancer 2,008 0.29 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A8,5 Lung Primary cancer 2,592 0.34 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A8,6 Lung Primary cancer 952 0.16 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_A8,7 Lung Primary cancer 3,087 0.13 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_A8,8 Lung Primary cancer 3,789 0.13 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_A8,9 Lung Primary cancer 2,808 0.09 0.04 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_B1,1 Lung Primary cancer 4,170 0.42 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_B1,10 Lung Primary cancer 3,178 0.28 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B1,11 Lung Primary cancer 8,194 0.06 -0.01 Homogeneous Neutral
NSCLC_38242124__IMC__88_B1,12 Lung Primary cancer 2,767 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B1,14 Lung Primary cancer 3,280 0.17 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B1,15 Lung Primary cancer 2,914 0.37 0.10 Highly modular Weakly segregated
NSCLC_38242124__IMC__88_B1,16 Lung Primary cancer 2,650 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B1,2 Lung Primary cancer 3,987 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B1,3 Lung Primary cancer 4,072 0.28 0.17 Weakly structured Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__88_A8,13 Lung Primary cancer 2,935 0.25 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A8,14 Lung Primary cancer 2,259 0.33 0.15 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A8,15 Lung Primary cancer 2,669 0.23 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A8,2 Lung Primary cancer 3,251 0.44 0.13 Highly modular Weakly segregated
NSCLC_38242124__IMC__88_A8,3 Lung Primary cancer 2,827 0.21 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A8,4 Lung Primary cancer 2,008 0.29 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A8,5 Lung Primary cancer 2,592 0.34 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A8,6 Lung Primary cancer 952 0.16 0.07 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_A8,7 Lung Primary cancer 3,087 0.13 0.14 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_A8,8 Lung Primary cancer 3,789 0.13 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_A8,9 Lung Primary cancer 2,808 0.09 0.08 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_B1,1 Lung Primary cancer 4,170 0.42 0.12 Highly modular Weakly segregated
NSCLC_38242124__IMC__88_B1,10 Lung Primary cancer 3,178 0.28 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B1,11 Lung Primary cancer 8,194 0.06 -0.05 Homogeneous Weakly mixed
NSCLC_38242124__IMC__88_B1,12 Lung Primary cancer 2,767 0.26 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B1,14 Lung Primary cancer 3,280 0.17 0.07 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B1,15 Lung Primary cancer 2,914 0.37 0.09 Highly modular Weakly segregated
NSCLC_38242124__IMC__88_B1,16 Lung Primary cancer 2,650 0.25 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B1,2 Lung Primary cancer 3,987 0.24 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B1,3 Lung Primary cancer 4,072 0.29 0.11 Weakly structured Weakly segregated