scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Spatial Domain

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Spatial Domain (Tier 1)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__88_B1,4 Lung Primary cancer 2,870 Tumor/Malignant 74.4% 0.98 0.08
NSCLC_38242124__IMC__88_B1,5 Lung Primary cancer 3,425 Tumor/Malignant 46.5% 0.74 0.53
NSCLC_38242124__IMC__88_B1,6 Lung Primary cancer 3,172 Tumor/Malignant 62.9% 0.98 0.07
NSCLC_38242124__IMC__88_B1,7 Lung Primary cancer 3,614 Tumor/Malignant 79.8% 0.97 0.11
NSCLC_38242124__IMC__88_B1,8 Lung Primary cancer 3,530 Tumor/Malignant 37.3% 0.95 0.18
NSCLC_38242124__IMC__88_B1,9 Lung Primary cancer 3,597 Immune 33.8% 0.43 0.90
NSCLC_38242124__IMC__88_B2,10 Lung Primary cancer 2,913 Tumor/Malignant 52.9% 1.00 0.02
NSCLC_38242124__IMC__88_B2,11 Lung Primary cancer 2,095 Tumor/Malignant 29.1% 0.59 0.86
NSCLC_38242124__IMC__88_B2,12 Lung Primary cancer 3,199 Tumor/Malignant 58.4% 0.97 0.11
NSCLC_38242124__IMC__88_B2,13 Lung Primary cancer 2,837 Tumor/Malignant 76.4% 0.99 0.05
NSCLC_38242124__IMC__88_B2,14 Lung Primary cancer 3,699 Tumor/Malignant 42.8% 0.94 0.20
NSCLC_38242124__IMC__88_B2,15 Lung Primary cancer 2,967 Tumor/Malignant 53.5% 0.93 0.19
NSCLC_38242124__IMC__88_B2,16 Lung Primary cancer 2,965 Stromal 42.5% 0.95 0.17
NSCLC_38242124__IMC__88_B2,2 Lung Primary cancer 3,574 Tumor/Malignant 55.7% 0.89 0.29
NSCLC_38242124__IMC__88_B2,3 Lung Primary cancer 5,348 Tumor/Malignant 62.2% 0.94 0.17
NSCLC_38242124__IMC__88_B2,4 Lung Primary cancer 3,042 Tumor/Malignant 51.6% 0.96 0.12
NSCLC_38242124__IMC__88_B2,5 Lung Primary cancer 4,928 Tumor/Malignant 32.2% 0.89 0.36
NSCLC_38242124__IMC__88_B2,6 Lung Primary cancer 3,667 Tumor/Malignant 71.1% 0.94 0.17
NSCLC_38242124__IMC__88_B2,7 Lung Primary cancer 3,297 Tumor/Malignant 41.4% 0.97 0.09
NSCLC_38242124__IMC__88_B2,9 Lung Primary cancer 2,533 Immune 26.9% 0.60 0.76

Spatial Domain (Tier 2)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__88_B1,4 Lung Primary cancer 2,870 Tumor/Malignant 71.6% 0.98 0.07
NSCLC_38242124__IMC__88_B1,5 Lung Primary cancer 3,425 Tumor/Malignant 42.9% 0.50 0.71
NSCLC_38242124__IMC__88_B1,6 Lung Primary cancer 3,172 Tumor/Malignant 59.1% 0.99 0.05
NSCLC_38242124__IMC__88_B1,7 Lung Primary cancer 3,614 Tumor/Malignant 69.8% 0.99 0.05
NSCLC_38242124__IMC__88_B1,8 Lung Primary cancer 3,530 Tumor/Malignant 26.0% 1.00 0.04
NSCLC_38242124__IMC__88_B1,9 Lung Primary cancer 3,597 Stromal 23.0% 0.78 0.54
NSCLC_38242124__IMC__88_B2,10 Lung Primary cancer 2,913 Tumor/Malignant 52.9% 1.00 0.02
NSCLC_38242124__IMC__88_B2,11 Lung Primary cancer 2,095 Tumor/Malignant 27.1% 0.34 1.07
NSCLC_38242124__IMC__88_B2,12 Lung Primary cancer 3,199 Tumor/Malignant 49.5% 1.00 0.03
NSCLC_38242124__IMC__88_B2,13 Lung Primary cancer 2,837 Tumor/Malignant 53.6% 0.98 0.06
NSCLC_38242124__IMC__88_B2,14 Lung Primary cancer 3,699 Tumor/Malignant 32.2% 0.99 0.09
NSCLC_38242124__IMC__88_B2,15 Lung Primary cancer 2,967 Tumor/Malignant 50.6% 0.94 0.16
NSCLC_38242124__IMC__88_B2,16 Lung Primary cancer 2,965 Stromal 35.9% 0.97 0.12
NSCLC_38242124__IMC__88_B2,2 Lung Primary cancer 3,574 Tumor/Malignant 37.4% 0.75 0.54
NSCLC_38242124__IMC__88_B2,3 Lung Primary cancer 5,348 Tumor/Malignant 57.8% 0.96 0.15
NSCLC_38242124__IMC__88_B2,4 Lung Primary cancer 3,042 Tumor/Malignant 51.6% 0.96 0.12
NSCLC_38242124__IMC__88_B2,5 Lung Primary cancer 4,928 Tumor/Malignant 23.1% 0.94 0.22
NSCLC_38242124__IMC__88_B2,6 Lung Primary cancer 3,667 Tumor/Malignant 52.0% 0.99 0.05
NSCLC_38242124__IMC__88_B2,7 Lung Primary cancer 3,297 Tumor/Malignant 42.1% 0.97 0.10
NSCLC_38242124__IMC__88_B2,9 Lung Primary cancer 2,533 Other 25.0% 0.37 1.06

Spatial Domain (Tier 3)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__88_B1,4 Lung Primary cancer 2,870 Tumor/Malignant cell 74.0% 0.98 0.08
NSCLC_38242124__IMC__88_B1,5 Lung Primary cancer 3,425 Tumor/Malignant cell 48.1% 0.73 0.55
NSCLC_38242124__IMC__88_B1,6 Lung Primary cancer 3,172 Tumor/Malignant cell 75.1% 0.95 0.15
NSCLC_38242124__IMC__88_B1,7 Lung Primary cancer 3,614 Tumor/Malignant cell 73.0% 0.98 0.07
NSCLC_38242124__IMC__88_B1,8 Lung Primary cancer 3,530 Tumor/Malignant cell 37.1% 0.96 0.17
NSCLC_38242124__IMC__88_B1,9 Lung Primary cancer 3,597 T cell 24.9% 0.37 1.08
NSCLC_38242124__IMC__88_B2,10 Lung Primary cancer 2,913 Tumor/Malignant cell 65.6% 0.96 0.13
NSCLC_38242124__IMC__88_B2,11 Lung Primary cancer 2,095 Tumor/Malignant cell 23.0% 0.64 0.90
NSCLC_38242124__IMC__88_B2,12 Lung Primary cancer 3,199 Tumor/Malignant cell 58.5% 0.97 0.11
NSCLC_38242124__IMC__88_B2,13 Lung Primary cancer 2,837 Tumor/Malignant cell 76.5% 0.99 0.05
NSCLC_38242124__IMC__88_B2,14 Lung Primary cancer 3,699 Tumor/Malignant cell 44.2% 0.94 0.22
NSCLC_38242124__IMC__88_B2,15 Lung Primary cancer 2,967 Tumor/Malignant cell 54.0% 0.93 0.21
NSCLC_38242124__IMC__88_B2,16 Lung Primary cancer 2,965 Fibroblast 41.9% 0.90 0.25
NSCLC_38242124__IMC__88_B2,2 Lung Primary cancer 3,574 Tumor/Malignant cell 55.5% 0.89 0.29
NSCLC_38242124__IMC__88_B2,3 Lung Primary cancer 5,348 Tumor/Malignant cell 62.2% 0.94 0.17
NSCLC_38242124__IMC__88_B2,4 Lung Primary cancer 3,042 Tumor/Malignant cell 52.7% 0.96 0.14
NSCLC_38242124__IMC__88_B2,5 Lung Primary cancer 4,928 Tumor/Malignant cell 31.1% 0.90 0.35
NSCLC_38242124__IMC__88_B2,6 Lung Primary cancer 3,667 Tumor/Malignant cell 71.0% 0.94 0.17
NSCLC_38242124__IMC__88_B2,7 Lung Primary cancer 3,297 Tumor/Malignant cell 41.6% 0.97 0.09
NSCLC_38242124__IMC__88_B2,9 Lung Primary cancer 2,533 Other 25.1% 0.74 0.60