scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__88_B1,4 Lung Primary cancer 2,870 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B1,5 Lung Primary cancer 3,425 0.20 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B1,6 Lung Primary cancer 3,172 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B1,7 Lung Primary cancer 3,614 0.08 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_B1,8 Lung Primary cancer 3,530 0.33 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B1,9 Lung Primary cancer 3,597 0.20 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B2,10 Lung Primary cancer 2,913 0.28 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B2,11 Lung Primary cancer 2,095 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B2,12 Lung Primary cancer 3,199 0.40 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_B2,13 Lung Primary cancer 2,837 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B2,14 Lung Primary cancer 3,699 0.38 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_B2,15 Lung Primary cancer 2,967 0.35 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B2,16 Lung Primary cancer 2,965 0.32 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B2,2 Lung Primary cancer 3,574 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B2,3 Lung Primary cancer 5,348 0.29 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B2,4 Lung Primary cancer 3,042 0.42 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_B2,5 Lung Primary cancer 4,928 0.30 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B2,6 Lung Primary cancer 3,667 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B2,7 Lung Primary cancer 3,297 0.42 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_B2,9 Lung Primary cancer 2,533 0.20 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__88_B1,4 Lung Primary cancer 2,870 0.17 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B1,5 Lung Primary cancer 3,425 0.20 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B1,6 Lung Primary cancer 3,172 0.21 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B1,7 Lung Primary cancer 3,614 0.08 0.12 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_B1,8 Lung Primary cancer 3,530 0.34 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B1,9 Lung Primary cancer 3,597 0.22 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B2,10 Lung Primary cancer 2,913 0.28 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B2,11 Lung Primary cancer 2,095 0.20 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B2,12 Lung Primary cancer 3,199 0.40 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_B2,13 Lung Primary cancer 2,837 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B2,14 Lung Primary cancer 3,699 0.38 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_B2,15 Lung Primary cancer 2,967 0.35 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B2,16 Lung Primary cancer 2,965 0.32 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B2,2 Lung Primary cancer 3,574 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B2,3 Lung Primary cancer 5,348 0.29 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B2,4 Lung Primary cancer 3,042 0.42 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_B2,5 Lung Primary cancer 4,928 0.35 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B2,6 Lung Primary cancer 3,667 0.23 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B2,7 Lung Primary cancer 3,297 0.42 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_B2,9 Lung Primary cancer 2,533 0.20 0.17 Weakly structured Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__88_B1,4 Lung Primary cancer 2,870 0.17 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B1,5 Lung Primary cancer 3,425 0.20 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B1,6 Lung Primary cancer 3,172 0.21 0.04 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B1,7 Lung Primary cancer 3,614 0.08 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_B1,8 Lung Primary cancer 3,530 0.34 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B1,9 Lung Primary cancer 3,597 0.23 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B2,10 Lung Primary cancer 2,913 0.28 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B2,11 Lung Primary cancer 2,095 0.22 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B2,12 Lung Primary cancer 3,199 0.40 0.13 Highly modular Weakly segregated
NSCLC_38242124__IMC__88_B2,13 Lung Primary cancer 2,837 0.24 0.15 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B2,14 Lung Primary cancer 3,699 0.38 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__88_B2,15 Lung Primary cancer 2,967 0.35 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B2,16 Lung Primary cancer 2,965 0.32 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B2,2 Lung Primary cancer 3,574 0.21 0.16 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B2,3 Lung Primary cancer 5,348 0.31 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B2,4 Lung Primary cancer 3,042 0.42 0.13 Highly modular Weakly segregated
NSCLC_38242124__IMC__88_B2,5 Lung Primary cancer 4,928 0.36 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__88_B2,6 Lung Primary cancer 3,667 0.23 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B2,7 Lung Primary cancer 3,297 0.42 0.10 Highly modular Weakly segregated
NSCLC_38242124__IMC__88_B2,9 Lung Primary cancer 2,533 0.21 0.11 Weakly structured Weakly segregated