scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Spatial Domain

Download spatial tables

Spatial Domain (Tier 1)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__88_B3,1 Lung Primary cancer 3,047 Other 28.4% 0.42 0.93
NSCLC_38242124__IMC__88_B3,10 Lung Primary cancer 1,646 Stromal 41.4% 0.76 0.54
NSCLC_38242124__IMC__88_B3,11 Lung Primary cancer 396 Tumor/Malignant 79.5% 0.96 0.11
NSCLC_38242124__IMC__88_B3,12 Lung Primary cancer 2,461 Tumor/Malignant 62.6% 0.98 0.12
NSCLC_38242124__IMC__88_B3,13 Lung Primary cancer 2,525 Tumor/Malignant 63.0% 0.96 0.13
NSCLC_38242124__IMC__88_B3,14 Lung Primary cancer 2,309 Tumor/Malignant 47.4% 0.96 0.18
NSCLC_38242124__IMC__88_B3,15 Lung Primary cancer 3,583 Tumor/Malignant 60.0% 0.94 0.19
NSCLC_38242124__IMC__88_B3,16 Lung Primary cancer 2,973 Tumor/Malignant 55.3% 0.92 0.24
NSCLC_38242124__IMC__88_B3,4 Lung Primary cancer 5,405 Stromal 57.5% 0.99 0.06
NSCLC_38242124__IMC__88_B3,5 Lung Primary cancer 3,434 Tumor/Malignant 55.5% 0.94 0.18
NSCLC_38242124__IMC__88_B3,6 Lung Primary cancer 4,461 Tumor/Malignant 42.0% 0.94 0.18
NSCLC_38242124__IMC__88_B3,7 Lung Primary cancer 3,167 Stromal 37.3% 0.76 0.51
NSCLC_38242124__IMC__88_B3,8 Lung Primary cancer 2,624 Tumor/Malignant 28.4% 0.90 0.32
NSCLC_38242124__IMC__88_B3,9 Lung Primary cancer 2,779 Tumor/Malignant 35.9% 1.00 0.06
NSCLC_38242124__IMC__88_B4,1 Lung Primary cancer 1,954 Tumor/Malignant 63.8% 0.96 0.13
NSCLC_38242124__IMC__88_B4,10 Lung Primary cancer 2,510 Tumor/Malignant 43.6% 0.96 0.16
NSCLC_38242124__IMC__88_B4,11 Lung Primary cancer 2,674 Tumor/Malignant 75.1% 0.95 0.13
NSCLC_38242124__IMC__88_B4,12 Lung Primary cancer 2,865 Tumor/Malignant 43.5% 0.94 0.21
NSCLC_38242124__IMC__88_B4,14 Lung Primary cancer 2,759 Immune 23.8% 0.84 0.43
NSCLC_38242124__IMC__88_B4,15 Lung Primary cancer 4,974 Tumor/Malignant 80.4% 0.98 0.08

Spatial Domain (Tier 2)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__88_B3,1 Lung Primary cancer 3,047 Stromal 22.1% 0.77 0.56
NSCLC_38242124__IMC__88_B3,10 Lung Primary cancer 1,646 Stromal 27.1% 0.84 0.42
NSCLC_38242124__IMC__88_B3,11 Lung Primary cancer 396 Tumor/Malignant 80.6% 0.96 0.11
NSCLC_38242124__IMC__88_B3,12 Lung Primary cancer 2,461 Tumor/Malignant 51.8% 1.00 0.04
NSCLC_38242124__IMC__88_B3,13 Lung Primary cancer 2,525 Tumor/Malignant 51.0% 0.99 0.03
NSCLC_38242124__IMC__88_B3,14 Lung Primary cancer 2,309 Tumor/Malignant 48.8% 0.94 0.21
NSCLC_38242124__IMC__88_B3,15 Lung Primary cancer 3,583 Tumor/Malignant 39.9% 1.00 0.04
NSCLC_38242124__IMC__88_B3,16 Lung Primary cancer 2,973 Tumor/Malignant 51.8% 0.94 0.21
NSCLC_38242124__IMC__88_B3,4 Lung Primary cancer 5,405 Stromal 57.2% 0.99 0.06
NSCLC_38242124__IMC__88_B3,5 Lung Primary cancer 3,434 Tumor/Malignant 52.1% 0.95 0.15
NSCLC_38242124__IMC__88_B3,6 Lung Primary cancer 4,461 Tumor/Malignant 38.8% 0.96 0.14
NSCLC_38242124__IMC__88_B3,7 Lung Primary cancer 3,167 Stromal 35.3% 0.51 0.93
NSCLC_38242124__IMC__88_B3,8 Lung Primary cancer 2,624 Tumor/Malignant 23.2% 0.95 0.22
NSCLC_38242124__IMC__88_B3,9 Lung Primary cancer 2,779 Tumor/Malignant 36.7% 1.00 0.07
NSCLC_38242124__IMC__88_B4,1 Lung Primary cancer 1,954 Tumor/Malignant 57.4% 0.99 0.09
NSCLC_38242124__IMC__88_B4,10 Lung Primary cancer 2,510 Tumor/Malignant 32.6% 0.98 0.07
NSCLC_38242124__IMC__88_B4,11 Lung Primary cancer 2,674 Tumor/Malignant 57.8% 1.00 0.02
NSCLC_38242124__IMC__88_B4,12 Lung Primary cancer 2,865 Tumor/Malignant 38.9% 0.96 0.16
NSCLC_38242124__IMC__88_B4,14 Lung Primary cancer 2,759 Lymphoid 22.0% 0.74 0.64
NSCLC_38242124__IMC__88_B4,15 Lung Primary cancer 4,974 Tumor/Malignant 72.4% 0.99 0.03

Spatial Domain (Tier 3)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__88_B3,1 Lung Primary cancer 3,047 Fibroblast 28.0% 0.65 0.77
NSCLC_38242124__IMC__88_B3,10 Lung Primary cancer 1,646 Fibroblast 34.4% 0.76 0.56
NSCLC_38242124__IMC__88_B3,11 Lung Primary cancer 396 Tumor/Malignant cell 80.6% 0.96 0.11
NSCLC_38242124__IMC__88_B3,12 Lung Primary cancer 2,461 Tumor/Malignant cell 62.5% 0.98 0.12
NSCLC_38242124__IMC__88_B3,13 Lung Primary cancer 2,525 Tumor/Malignant cell 62.2% 0.97 0.12
NSCLC_38242124__IMC__88_B3,14 Lung Primary cancer 2,309 Tumor/Malignant cell 52.6% 0.93 0.25
NSCLC_38242124__IMC__88_B3,15 Lung Primary cancer 3,583 Tumor/Malignant cell 60.7% 0.94 0.20
NSCLC_38242124__IMC__88_B3,16 Lung Primary cancer 2,973 Tumor/Malignant cell 54.8% 0.93 0.24
NSCLC_38242124__IMC__88_B3,4 Lung Primary cancer 5,405 Fibroblast 65.1% 0.96 0.13
NSCLC_38242124__IMC__88_B3,5 Lung Primary cancer 3,434 Tumor/Malignant cell 55.9% 0.94 0.19
NSCLC_38242124__IMC__88_B3,6 Lung Primary cancer 4,461 Tumor/Malignant cell 43.0% 0.94 0.20
NSCLC_38242124__IMC__88_B3,7 Lung Primary cancer 3,167 Fibroblast 31.5% 0.76 0.62
NSCLC_38242124__IMC__88_B3,8 Lung Primary cancer 2,624 Tumor/Malignant cell 27.9% 0.91 0.32
NSCLC_38242124__IMC__88_B3,9 Lung Primary cancer 2,779 Tumor/Malignant cell 59.4% 0.94 0.23
NSCLC_38242124__IMC__88_B4,1 Lung Primary cancer 1,954 Tumor/Malignant cell 66.3% 0.97 0.14
NSCLC_38242124__IMC__88_B4,10 Lung Primary cancer 2,510 Tumor/Malignant cell 47.8% 0.95 0.21
NSCLC_38242124__IMC__88_B4,11 Lung Primary cancer 2,674 Tumor/Malignant cell 74.3% 0.95 0.13
NSCLC_38242124__IMC__88_B4,12 Lung Primary cancer 2,865 Tumor/Malignant cell 43.4% 0.94 0.21
NSCLC_38242124__IMC__88_B4,14 Lung Primary cancer 2,759 B cell 27.7% 0.43 1.02
NSCLC_38242124__IMC__88_B4,15 Lung Primary cancer 4,974 Tumor/Malignant cell 80.4% 0.98 0.08