scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__88_B3,1 Lung Primary cancer 3,047 0.33 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B3,10 Lung Primary cancer 1,646 0.20 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B3,11 Lung Primary cancer 396 0.03 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_B3,12 Lung Primary cancer 2,461 0.14 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_B3,13 Lung Primary cancer 2,525 0.19 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B3,14 Lung Primary cancer 2,309 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B3,15 Lung Primary cancer 3,583 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B3,16 Lung Primary cancer 2,973 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B3,4 Lung Primary cancer 5,405 0.09 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_B3,5 Lung Primary cancer 3,434 0.34 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B3,6 Lung Primary cancer 4,461 0.37 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_B3,7 Lung Primary cancer 3,167 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B3,8 Lung Primary cancer 2,624 0.27 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B3,9 Lung Primary cancer 2,779 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B4,1 Lung Primary cancer 1,954 0.19 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B4,10 Lung Primary cancer 2,510 0.31 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B4,11 Lung Primary cancer 2,674 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B4,12 Lung Primary cancer 2,865 0.35 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_B4,14 Lung Primary cancer 2,759 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B4,15 Lung Primary cancer 4,974 0.13 0.20 Homogeneous Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__88_B3,1 Lung Primary cancer 3,047 0.33 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B3,10 Lung Primary cancer 1,646 0.22 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B3,11 Lung Primary cancer 396 0.03 0.15 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_B3,12 Lung Primary cancer 2,461 0.14 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_B3,13 Lung Primary cancer 2,525 0.19 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B3,14 Lung Primary cancer 2,309 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B3,15 Lung Primary cancer 3,583 0.24 0.19 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B3,16 Lung Primary cancer 2,973 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B3,4 Lung Primary cancer 5,405 0.09 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_B3,5 Lung Primary cancer 3,434 0.34 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B3,6 Lung Primary cancer 4,461 0.39 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_B3,7 Lung Primary cancer 3,167 0.19 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B3,8 Lung Primary cancer 2,624 0.28 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B3,9 Lung Primary cancer 2,779 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B4,1 Lung Primary cancer 1,954 0.19 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B4,10 Lung Primary cancer 2,510 0.31 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B4,11 Lung Primary cancer 2,674 0.23 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B4,12 Lung Primary cancer 2,865 0.35 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_B4,14 Lung Primary cancer 2,759 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B4,15 Lung Primary cancer 4,974 0.13 0.10 Homogeneous Weakly segregated

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__88_B3,1 Lung Primary cancer 3,047 0.33 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B3,10 Lung Primary cancer 1,646 0.22 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B3,11 Lung Primary cancer 396 0.03 0.13 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_B3,12 Lung Primary cancer 2,461 0.14 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_B3,13 Lung Primary cancer 2,525 0.19 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B3,14 Lung Primary cancer 2,309 0.26 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B3,15 Lung Primary cancer 3,583 0.24 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B3,16 Lung Primary cancer 2,973 0.25 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B3,4 Lung Primary cancer 5,405 0.10 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_B3,5 Lung Primary cancer 3,434 0.34 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B3,6 Lung Primary cancer 4,461 0.40 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__88_B3,7 Lung Primary cancer 3,167 0.19 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B3,8 Lung Primary cancer 2,624 0.28 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B3,9 Lung Primary cancer 2,779 0.24 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B4,1 Lung Primary cancer 1,954 0.19 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B4,10 Lung Primary cancer 2,510 0.31 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B4,11 Lung Primary cancer 2,674 0.23 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B4,12 Lung Primary cancer 2,865 0.35 0.10 Highly modular Weakly segregated
NSCLC_38242124__IMC__88_B4,14 Lung Primary cancer 2,759 0.25 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B4,15 Lung Primary cancer 4,974 0.13 0.06 Homogeneous Weakly segregated