scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Spatial Domain

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Spatial Domain (Tier 1)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__88_B4,16 Lung Primary cancer 1,578 Stromal 26.7% 0.81 0.49
NSCLC_38242124__IMC__88_B4,2 Lung Primary cancer 2,795 Tumor/Malignant 44.5% 0.91 0.32
NSCLC_38242124__IMC__88_B4,3 Lung Primary cancer 4,121 Stromal 26.2% 0.85 0.36
NSCLC_38242124__IMC__88_B4,4 Lung Primary cancer 5,116 Stromal 59.5% 0.99 0.06
NSCLC_38242124__IMC__88_B4,5 Lung Primary cancer 3,705 Tumor/Malignant 34.6% 0.93 0.21
NSCLC_38242124__IMC__88_B4,6 Lung Primary cancer 5,898 Immune 81.0% 0.99 0.04
NSCLC_38242124__IMC__88_B4,7 Lung Primary cancer 2,710 Stromal 30.1% 0.87 0.38
NSCLC_38242124__IMC__88_B4,8 Lung Primary cancer 2,611 Immune 33.5% 0.89 0.36
NSCLC_38242124__IMC__88_B4,9 Lung Primary cancer 483 Tumor/Malignant 36.4% 0.91 0.22
NSCLC_38242124__IMC__88_B5,1 Lung Primary cancer 3,360 Tumor/Malignant 29.6% 0.91 0.30
NSCLC_38242124__IMC__88_B5,10 Lung Primary cancer 2,455 Tumor/Malignant 48.4% 0.97 0.14
NSCLC_38242124__IMC__88_B5,11 Lung Primary cancer 2,235 Tumor/Malignant 44.3% 0.48 0.75
NSCLC_38242124__IMC__88_B5,12 Lung Primary cancer 3,349 Other 28.9% 0.41 0.97
NSCLC_38242124__IMC__88_B5,13 Lung Primary cancer 2,743 Stromal 28.2% 0.67 0.75
NSCLC_38242124__IMC__88_B5,14 Lung Primary cancer 2,532 Tumor/Malignant 47.4% 0.95 0.19
NSCLC_38242124__IMC__88_B5,15 Lung Primary cancer 3,873 Tumor/Malignant 28.1% 0.90 0.34
NSCLC_38242124__IMC__88_B5,16 Lung Primary cancer 3,905 Tumor/Malignant 66.4% 0.98 0.08
NSCLC_38242124__IMC__88_B5,2 Lung Primary cancer 2,901 Tumor/Malignant 58.3% 0.94 0.23
NSCLC_38242124__IMC__88_B5,3 Lung Primary cancer 1,956 Tumor/Malignant 51.5% 0.95 0.20
NSCLC_38242124__IMC__88_B5,4 Lung Primary cancer 2,354 Tumor/Malignant 58.3% 0.95 0.18

Spatial Domain (Tier 2)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__88_B4,16 Lung Primary cancer 1,578 Stromal 24.8% 0.81 0.48
NSCLC_38242124__IMC__88_B4,2 Lung Primary cancer 2,795 Tumor/Malignant 34.1% 0.66 0.74
NSCLC_38242124__IMC__88_B4,3 Lung Primary cancer 4,121 Tumor/Malignant 24.0% 0.96 0.11
NSCLC_38242124__IMC__88_B4,4 Lung Primary cancer 5,116 Stromal 67.2% 0.97 0.11
NSCLC_38242124__IMC__88_B4,5 Lung Primary cancer 3,705 Tumor/Malignant 32.7% 0.94 0.18
NSCLC_38242124__IMC__88_B4,6 Lung Primary cancer 5,898 Myeloid 80.6% 0.99 0.04
NSCLC_38242124__IMC__88_B4,7 Lung Primary cancer 2,710 Stromal 33.0% 0.86 0.41
NSCLC_38242124__IMC__88_B4,8 Lung Primary cancer 2,611 Myeloid 26.6% 0.87 0.44
NSCLC_38242124__IMC__88_B4,9 Lung Primary cancer 483 Tumor/Malignant 39.8% 0.89 0.27
NSCLC_38242124__IMC__88_B5,1 Lung Primary cancer 3,360 Tumor/Malignant 29.6% 0.91 0.30
NSCLC_38242124__IMC__88_B5,10 Lung Primary cancer 2,455 Tumor/Malignant 39.4% 1.00 0.04
NSCLC_38242124__IMC__88_B5,11 Lung Primary cancer 2,235 Myeloid 34.9% 0.46 0.83
NSCLC_38242124__IMC__88_B5,12 Lung Primary cancer 3,349 Other 24.8% 0.51 1.00
NSCLC_38242124__IMC__88_B5,13 Lung Primary cancer 2,743 Stromal 21.5% 0.73 0.71
NSCLC_38242124__IMC__88_B5,14 Lung Primary cancer 2,532 Tumor/Malignant 48.2% 0.95 0.20
NSCLC_38242124__IMC__88_B5,15 Lung Primary cancer 3,873 Tumor/Malignant 23.6% 0.92 0.28
NSCLC_38242124__IMC__88_B5,16 Lung Primary cancer 3,905 Tumor/Malignant 63.2% 0.99 0.06
NSCLC_38242124__IMC__88_B5,2 Lung Primary cancer 2,901 Tumor/Malignant 36.5% 0.99 0.05
NSCLC_38242124__IMC__88_B5,3 Lung Primary cancer 1,956 Tumor/Malignant 45.4% 0.97 0.14
NSCLC_38242124__IMC__88_B5,4 Lung Primary cancer 2,354 Tumor/Malignant 42.2% 0.99 0.04

Spatial Domain (Tier 3)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__88_B4,16 Lung Primary cancer 1,578 T cell 21.2% 0.42 1.00
NSCLC_38242124__IMC__88_B4,2 Lung Primary cancer 2,795 Tumor/Malignant cell 49.7% 0.90 0.35
NSCLC_38242124__IMC__88_B4,3 Lung Primary cancer 4,121 Tumor/Malignant cell 24.4% 0.96 0.13
NSCLC_38242124__IMC__88_B4,4 Lung Primary cancer 5,116 Fibroblast 66.7% 0.97 0.11
NSCLC_38242124__IMC__88_B4,5 Lung Primary cancer 3,705 Tumor/Malignant cell 36.8% 0.92 0.26
NSCLC_38242124__IMC__88_B4,6 Lung Primary cancer 5,898 Granulocyte 90.2% 0.96 0.11
NSCLC_38242124__IMC__88_B4,7 Lung Primary cancer 2,710 Fibroblast 29.1% 0.80 0.56
NSCLC_38242124__IMC__88_B4,8 Lung Primary cancer 2,611 Myeloid cell, unspecified 35.6% 0.83 0.54
NSCLC_38242124__IMC__88_B4,9 Lung Primary cancer 483 Tumor/Malignant cell 40.6% 0.89 0.28
NSCLC_38242124__IMC__88_B5,1 Lung Primary cancer 3,360 Tumor/Malignant cell 35.7% 0.88 0.39
NSCLC_38242124__IMC__88_B5,10 Lung Primary cancer 2,455 Tumor/Malignant cell 48.4% 0.97 0.14
NSCLC_38242124__IMC__88_B5,11 Lung Primary cancer 2,235 Tumor/Malignant cell 42.9% 0.64 0.73
NSCLC_38242124__IMC__88_B5,12 Lung Primary cancer 3,349 Other 26.3% 0.74 0.68
NSCLC_38242124__IMC__88_B5,13 Lung Primary cancer 2,743 Endothelial cell 19.6% 0.29 1.23
NSCLC_38242124__IMC__88_B5,14 Lung Primary cancer 2,532 Tumor/Malignant cell 47.4% 0.95 0.19
NSCLC_38242124__IMC__88_B5,15 Lung Primary cancer 3,873 Tumor/Malignant cell 30.5% 0.88 0.41
NSCLC_38242124__IMC__88_B5,16 Lung Primary cancer 3,905 Tumor/Malignant cell 65.9% 0.98 0.08
NSCLC_38242124__IMC__88_B5,2 Lung Primary cancer 2,901 Tumor/Malignant cell 55.2% 0.95 0.21
NSCLC_38242124__IMC__88_B5,3 Lung Primary cancer 1,956 Tumor/Malignant cell 56.3% 0.93 0.23
NSCLC_38242124__IMC__88_B5,4 Lung Primary cancer 2,354 Tumor/Malignant cell 58.3% 0.95 0.18