scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

Download spatial tables

Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__88_B4,16 Lung Primary cancer 1,578 0.30 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B4,2 Lung Primary cancer 2,795 0.15 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B4,3 Lung Primary cancer 4,121 0.39 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_B4,4 Lung Primary cancer 5,116 0.07 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_B4,5 Lung Primary cancer 3,705 0.31 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B4,6 Lung Primary cancer 5,898 0.06 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_B4,7 Lung Primary cancer 2,710 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B4,8 Lung Primary cancer 2,611 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B4,9 Lung Primary cancer 483 0.29 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B5,1 Lung Primary cancer 3,360 0.29 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B5,10 Lung Primary cancer 2,455 0.40 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_B5,11 Lung Primary cancer 2,235 0.13 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_B5,12 Lung Primary cancer 3,349 0.15 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_B5,13 Lung Primary cancer 2,743 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B5,14 Lung Primary cancer 2,532 0.29 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B5,15 Lung Primary cancer 3,873 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B5,16 Lung Primary cancer 3,905 0.34 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B5,2 Lung Primary cancer 2,901 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B5,3 Lung Primary cancer 1,956 0.28 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B5,4 Lung Primary cancer 2,354 0.27 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__88_B4,16 Lung Primary cancer 1,578 0.31 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B4,2 Lung Primary cancer 2,795 0.15 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B4,3 Lung Primary cancer 4,121 0.41 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_B4,4 Lung Primary cancer 5,116 0.07 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_B4,5 Lung Primary cancer 3,705 0.31 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B4,6 Lung Primary cancer 5,898 0.06 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_B4,7 Lung Primary cancer 2,710 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B4,8 Lung Primary cancer 2,611 0.17 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B4,9 Lung Primary cancer 483 0.29 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B5,1 Lung Primary cancer 3,360 0.29 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B5,10 Lung Primary cancer 2,455 0.40 0.10 Highly modular Weakly segregated
NSCLC_38242124__IMC__88_B5,11 Lung Primary cancer 2,235 0.17 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B5,12 Lung Primary cancer 3,349 0.15 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_B5,13 Lung Primary cancer 2,743 0.17 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B5,14 Lung Primary cancer 2,532 0.30 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B5,15 Lung Primary cancer 3,873 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B5,16 Lung Primary cancer 3,905 0.34 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B5,2 Lung Primary cancer 2,901 0.23 0.19 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B5,3 Lung Primary cancer 1,956 0.28 0.04 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B5,4 Lung Primary cancer 2,354 0.27 0.10 Weakly structured Weakly segregated

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__88_B4,16 Lung Primary cancer 1,578 0.32 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B4,2 Lung Primary cancer 2,795 0.16 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B4,3 Lung Primary cancer 4,121 0.41 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__88_B4,4 Lung Primary cancer 5,116 0.09 0.09 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_B4,5 Lung Primary cancer 3,705 0.31 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B4,6 Lung Primary cancer 5,898 0.07 0.07 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_B4,7 Lung Primary cancer 2,710 0.24 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B4,8 Lung Primary cancer 2,611 0.17 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B4,9 Lung Primary cancer 483 0.30 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B5,1 Lung Primary cancer 3,360 0.29 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B5,10 Lung Primary cancer 2,455 0.40 0.13 Highly modular Weakly segregated
NSCLC_38242124__IMC__88_B5,11 Lung Primary cancer 2,235 0.17 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B5,12 Lung Primary cancer 3,349 0.15 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_B5,13 Lung Primary cancer 2,743 0.17 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B5,14 Lung Primary cancer 2,532 0.30 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B5,15 Lung Primary cancer 3,873 0.26 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B5,16 Lung Primary cancer 3,905 0.34 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B5,2 Lung Primary cancer 2,901 0.23 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B5,3 Lung Primary cancer 1,956 0.28 0.04 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B5,4 Lung Primary cancer 2,354 0.27 0.07 Weakly structured Weakly segregated