scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Spatial Domain

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Spatial Domain (Tier 1)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__88_B5,5 Lung Primary cancer 4,378 Tumor/Malignant 79.3% 0.99 0.05
NSCLC_38242124__IMC__88_B5,6 Lung Primary cancer 2,423 Tumor/Malignant 28.5% 0.94 0.17
NSCLC_38242124__IMC__88_B5,7 Lung Primary cancer 232 Immune 70.7% 0.37 0.82
NSCLC_38242124__IMC__88_B6,1 Lung Primary cancer 3,161 Tumor/Malignant 28.0% 0.52 0.90
NSCLC_38242124__IMC__88_B6,10 Lung Primary cancer 1,414 Tumor/Malignant 82.3% 0.99 0.02
NSCLC_38242124__IMC__88_B6,12 Lung Primary cancer 1,589 Other 39.8% 0.37 0.95
NSCLC_38242124__IMC__88_B6,14 Lung Primary cancer 2,851 Tumor/Malignant 34.2% 0.49 0.88
NSCLC_38242124__IMC__88_B6,15 Lung Primary cancer 3,265 Stromal 26.7% 0.83 0.47
NSCLC_38242124__IMC__88_B6,16 Lung Primary cancer 3,196 Tumor/Malignant 77.2% 1.00 0.02
NSCLC_38242124__IMC__88_B6,2 Lung Primary cancer 2,660 Tumor/Malignant 51.8% 0.96 0.17
NSCLC_38242124__IMC__88_B6,3 Lung Primary cancer 2,411 Tumor/Malignant 48.7% 0.93 0.20
NSCLC_38242124__IMC__88_B6,4 Lung Primary cancer 3,055 Tumor/Malignant 35.2% 0.45 0.77
NSCLC_38242124__IMC__88_B6,5 Lung Primary cancer 4,509 Tumor/Malignant 82.6% 0.99 0.05
NSCLC_38242124__IMC__88_B6,6 Lung Primary cancer 1,875 Tumor/Malignant 68.2% 0.96 0.13
NSCLC_38242124__IMC__88_B6,7 Lung Primary cancer 2,103 Tumor/Malignant 68.0% 0.99 0.03
NSCLC_38242124__IMC__88_B6,8 Lung Primary cancer 2,661 Tumor/Malignant 44.7% 0.90 0.33
NSCLC_38242124__IMC__88_B6,9 Lung Primary cancer 2,809 Tumor/Malignant 40.6% 0.99 0.07
NSCLC_38242124__IMC__88_B7,1 Lung Primary cancer 1,493 Tumor/Malignant 60.5% 0.89 0.27
NSCLC_38242124__IMC__88_B7,10 Lung Primary cancer 3,431 Tumor/Malignant 76.7% 0.99 0.03
NSCLC_38242124__IMC__88_B7,11 Lung Primary cancer 4,633 Tumor/Malignant 90.5% 0.99 0.03

Spatial Domain (Tier 2)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__88_B5,5 Lung Primary cancer 4,378 Tumor/Malignant 65.6% 1.00 0.03
NSCLC_38242124__IMC__88_B5,6 Lung Primary cancer 2,423 Tumor/Malignant 26.9% 0.95 0.14
NSCLC_38242124__IMC__88_B5,7 Lung Primary cancer 232 Other 70.7% 0.33 0.93
NSCLC_38242124__IMC__88_B6,1 Lung Primary cancer 3,161 Tumor/Malignant 21.8% 0.57 0.95
NSCLC_38242124__IMC__88_B6,10 Lung Primary cancer 1,414 Tumor/Malignant 82.5% 1.00 0.02
NSCLC_38242124__IMC__88_B6,12 Lung Primary cancer 1,589 Myeloid 39.3% 0.30 1.08
NSCLC_38242124__IMC__88_B6,14 Lung Primary cancer 2,851 Tumor/Malignant 30.0% 0.51 0.89
NSCLC_38242124__IMC__88_B6,15 Lung Primary cancer 3,265 Stromal 21.8% 0.86 0.40
NSCLC_38242124__IMC__88_B6,16 Lung Primary cancer 3,196 Tumor/Malignant 78.3% 1.00 0.03
NSCLC_38242124__IMC__88_B6,2 Lung Primary cancer 2,660 Tumor/Malignant 51.8% 0.96 0.17
NSCLC_38242124__IMC__88_B6,3 Lung Primary cancer 2,411 Tumor/Malignant 48.7% 0.93 0.20
NSCLC_38242124__IMC__88_B6,4 Lung Primary cancer 3,055 Tumor/Malignant 34.8% 0.45 0.77
NSCLC_38242124__IMC__88_B6,5 Lung Primary cancer 4,509 Tumor/Malignant 69.9% 0.99 0.04
NSCLC_38242124__IMC__88_B6,6 Lung Primary cancer 1,875 Tumor/Malignant 55.4% 1.00 0.05
NSCLC_38242124__IMC__88_B6,7 Lung Primary cancer 2,103 Tumor/Malignant 82.9% 0.99 0.03
NSCLC_38242124__IMC__88_B6,8 Lung Primary cancer 2,661 Stromal 29.3% 0.61 0.79
NSCLC_38242124__IMC__88_B6,9 Lung Primary cancer 2,809 Tumor/Malignant 40.9% 0.99 0.08
NSCLC_38242124__IMC__88_B7,1 Lung Primary cancer 1,493 Tumor/Malignant 39.6% 0.73 0.56
NSCLC_38242124__IMC__88_B7,10 Lung Primary cancer 3,431 Tumor/Malignant 78.2% 0.99 0.04
NSCLC_38242124__IMC__88_B7,11 Lung Primary cancer 4,633 Tumor/Malignant 90.5% 0.99 0.03

Spatial Domain (Tier 3)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__88_B5,5 Lung Primary cancer 4,378 Tumor/Malignant cell 79.3% 0.99 0.05
NSCLC_38242124__IMC__88_B5,6 Lung Primary cancer 2,423 Tumor/Malignant cell 29.6% 0.93 0.20
NSCLC_38242124__IMC__88_B5,7 Lung Primary cancer 232 Other 70.7% 0.33 1.03
NSCLC_38242124__IMC__88_B6,1 Lung Primary cancer 3,161 Tumor/Malignant cell 36.1% 0.82 0.56
NSCLC_38242124__IMC__88_B6,10 Lung Primary cancer 1,414 Tumor/Malignant cell 82.7% 0.99 0.02
NSCLC_38242124__IMC__88_B6,12 Lung Primary cancer 1,589 Myeloid cell, unspecified 33.4% 0.26 1.22
NSCLC_38242124__IMC__88_B6,14 Lung Primary cancer 2,851 Tumor/Malignant cell 46.1% 0.84 0.47
NSCLC_38242124__IMC__88_B6,15 Lung Primary cancer 3,265 Fibroblast 28.2% 0.74 0.64
NSCLC_38242124__IMC__88_B6,16 Lung Primary cancer 3,196 Tumor/Malignant cell 78.5% 1.00 0.03
NSCLC_38242124__IMC__88_B6,2 Lung Primary cancer 2,660 Tumor/Malignant cell 55.6% 0.95 0.20
NSCLC_38242124__IMC__88_B6,3 Lung Primary cancer 2,411 Tumor/Malignant cell 48.5% 0.93 0.20
NSCLC_38242124__IMC__88_B6,4 Lung Primary cancer 3,055 Tumor/Malignant cell 33.9% 0.46 0.77
NSCLC_38242124__IMC__88_B6,5 Lung Primary cancer 4,509 Tumor/Malignant cell 82.7% 0.99 0.05
NSCLC_38242124__IMC__88_B6,6 Lung Primary cancer 1,875 Tumor/Malignant cell 60.8% 0.98 0.08
NSCLC_38242124__IMC__88_B6,7 Lung Primary cancer 2,103 Tumor/Malignant cell 87.1% 0.99 0.03
NSCLC_38242124__IMC__88_B6,8 Lung Primary cancer 2,661 Tumor/Malignant cell 44.5% 0.89 0.33
NSCLC_38242124__IMC__88_B6,9 Lung Primary cancer 2,809 Tumor/Malignant cell 44.8% 0.97 0.13
NSCLC_38242124__IMC__88_B7,1 Lung Primary cancer 1,493 Tumor/Malignant cell 58.7% 0.90 0.26
NSCLC_38242124__IMC__88_B7,10 Lung Primary cancer 3,431 Tumor/Malignant cell 85.1% 0.98 0.08
NSCLC_38242124__IMC__88_B7,11 Lung Primary cancer 4,633 Tumor/Malignant cell 93.4% 0.99 0.04