scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__88_B5,5 Lung Primary cancer 4,378 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B5,6 Lung Primary cancer 2,423 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B5,7 Lung Primary cancer 232 0.34 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B6,1 Lung Primary cancer 3,161 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B6,10 Lung Primary cancer 1,414 0.03 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_B6,12 Lung Primary cancer 1,589 0.14 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_B6,14 Lung Primary cancer 2,851 0.29 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B6,15 Lung Primary cancer 3,265 0.31 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B6,16 Lung Primary cancer 3,196 0.04 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_B6,2 Lung Primary cancer 2,660 0.28 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B6,3 Lung Primary cancer 2,411 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B6,4 Lung Primary cancer 3,055 0.28 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B6,5 Lung Primary cancer 4,509 0.14 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_B6,6 Lung Primary cancer 1,875 0.13 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_B6,7 Lung Primary cancer 2,103 0.14 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_B6,8 Lung Primary cancer 2,661 0.27 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B6,9 Lung Primary cancer 2,809 0.36 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_B7,1 Lung Primary cancer 1,493 0.15 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B7,10 Lung Primary cancer 3,431 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B7,11 Lung Primary cancer 4,633 0.02 0.20 Homogeneous Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__88_B5,5 Lung Primary cancer 4,378 0.23 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B5,6 Lung Primary cancer 2,423 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B5,7 Lung Primary cancer 232 0.34 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B6,1 Lung Primary cancer 3,161 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B6,10 Lung Primary cancer 1,414 0.03 0.15 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_B6,12 Lung Primary cancer 1,589 0.16 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B6,14 Lung Primary cancer 2,851 0.29 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B6,15 Lung Primary cancer 3,265 0.31 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B6,16 Lung Primary cancer 3,196 0.04 0.19 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_B6,2 Lung Primary cancer 2,660 0.28 0.19 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B6,3 Lung Primary cancer 2,411 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B6,4 Lung Primary cancer 3,055 0.28 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B6,5 Lung Primary cancer 4,509 0.14 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_B6,6 Lung Primary cancer 1,875 0.13 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_B6,7 Lung Primary cancer 2,103 0.14 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_B6,8 Lung Primary cancer 2,661 0.27 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B6,9 Lung Primary cancer 2,809 0.36 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_B7,1 Lung Primary cancer 1,493 0.15 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B7,10 Lung Primary cancer 3,431 0.17 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B7,11 Lung Primary cancer 4,633 0.02 0.20 Homogeneous Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__88_B5,5 Lung Primary cancer 4,378 0.23 0.14 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B5,6 Lung Primary cancer 2,423 0.26 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B5,7 Lung Primary cancer 232 0.34 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B6,1 Lung Primary cancer 3,161 0.24 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B6,10 Lung Primary cancer 1,414 0.03 0.09 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_B6,12 Lung Primary cancer 1,589 0.17 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B6,14 Lung Primary cancer 2,851 0.30 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B6,15 Lung Primary cancer 3,265 0.31 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B6,16 Lung Primary cancer 3,196 0.04 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_B6,2 Lung Primary cancer 2,660 0.28 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B6,3 Lung Primary cancer 2,411 0.26 0.15 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B6,4 Lung Primary cancer 3,055 0.28 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B6,5 Lung Primary cancer 4,509 0.14 0.13 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_B6,6 Lung Primary cancer 1,875 0.13 0.08 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_B6,7 Lung Primary cancer 2,103 0.14 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_B6,8 Lung Primary cancer 2,661 0.27 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B6,9 Lung Primary cancer 2,809 0.36 0.12 Highly modular Weakly segregated
NSCLC_38242124__IMC__88_B7,1 Lung Primary cancer 1,493 0.15 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B7,10 Lung Primary cancer 3,431 0.17 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B7,11 Lung Primary cancer 4,633 0.02 0.13 Homogeneous Weakly segregated