scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Spatial Domain

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Spatial Domain (Tier 1)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__88_B7,12 Lung Primary cancer 2,647 Stromal 30.6% 0.58 0.83
NSCLC_38242124__IMC__88_B7,13 Lung Primary cancer 4,755 Tumor/Malignant 62.2% 0.98 0.09
NSCLC_38242124__IMC__88_B7,14 Lung Primary cancer 284 Other 60.2% 0.81 0.44
NSCLC_38242124__IMC__88_B7,16 Lung Primary cancer 844 Tumor/Malignant 33.8% 0.71 0.62
NSCLC_38242124__IMC__88_B7,2 Lung Primary cancer 1,854 Stromal 47.4% 0.89 0.32
NSCLC_38242124__IMC__88_B7,3 Lung Primary cancer 4,192 Immune 31.8% 0.46 0.81
NSCLC_38242124__IMC__88_B7,4 Lung Primary cancer 460 Tumor/Malignant 67.2% 0.94 0.15
NSCLC_38242124__IMC__88_B7,5 Lung Primary cancer 5,248 Tumor/Malignant 66.0% 0.93 0.19
NSCLC_38242124__IMC__88_B7,6 Lung Primary cancer 3,607 Tumor/Malignant 71.9% 0.98 0.09
NSCLC_38242124__IMC__88_B7,7 Lung Primary cancer 3,116 Immune 63.1% 0.96 0.12
NSCLC_38242124__IMC__88_B7,8 Lung Primary cancer 201 Tumor/Malignant 59.7% 0.67 0.55
NSCLC_38242124__IMC__88_B7,9 Lung Primary cancer 367 Tumor/Malignant 54.0% 0.96 0.17
NSCLC_38242124__IMC__88_B8,1 Lung Primary cancer 2,911 Stromal 35.9% 0.85 0.40
NSCLC_38242124__IMC__88_B8,10 Lung Primary cancer 3,536 Tumor/Malignant 59.0% 0.99 0.03
NSCLC_38242124__IMC__88_B8,12 Lung Primary cancer 3,920 Tumor/Malignant 54.4% 0.96 0.11
NSCLC_38242124__IMC__88_B8,13 Lung Primary cancer 4,127 Tumor/Malignant 58.4% 0.93 0.21
NSCLC_38242124__IMC__88_B8,14 Lung Primary cancer 543 Tumor/Malignant 42.7% 0.86 0.40
NSCLC_38242124__IMC__88_B8,16 Lung Primary cancer 3,380 Tumor/Malignant 48.2% 1.00 0.05
NSCLC_38242124__IMC__88_B8,2 Lung Primary cancer 3,799 Tumor/Malignant 40.2% 0.98 0.15
NSCLC_38242124__IMC__88_B8,3 Lung Primary cancer 3,990 Tumor/Malignant 35.7% 0.93 0.24

Spatial Domain (Tier 2)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__88_B7,12 Lung Primary cancer 2,647 Stromal 21.7% 0.35 1.12
NSCLC_38242124__IMC__88_B7,13 Lung Primary cancer 4,755 Tumor/Malignant 53.8% 0.99 0.08
NSCLC_38242124__IMC__88_B7,14 Lung Primary cancer 284 Other 60.2% 0.81 0.44
NSCLC_38242124__IMC__88_B7,16 Lung Primary cancer 844 Other 41.4% 0.43 0.81
NSCLC_38242124__IMC__88_B7,2 Lung Primary cancer 1,854 Stromal 37.7% 0.74 0.59
NSCLC_38242124__IMC__88_B7,3 Lung Primary cancer 4,192 Stromal 28.5% 0.56 0.89
NSCLC_38242124__IMC__88_B7,4 Lung Primary cancer 460 Tumor/Malignant 67.4% 0.94 0.15
NSCLC_38242124__IMC__88_B7,5 Lung Primary cancer 5,248 Tumor/Malignant 41.6% 1.00 0.03
NSCLC_38242124__IMC__88_B7,6 Lung Primary cancer 3,607 Tumor/Malignant 64.8% 0.99 0.04
NSCLC_38242124__IMC__88_B7,7 Lung Primary cancer 3,116 Lymphoid 51.3% 0.99 0.04
NSCLC_38242124__IMC__88_B7,8 Lung Primary cancer 201 Tumor/Malignant 59.7% 0.67 0.55
NSCLC_38242124__IMC__88_B7,9 Lung Primary cancer 367 Tumor/Malignant 54.0% 0.96 0.17
NSCLC_38242124__IMC__88_B8,1 Lung Primary cancer 2,911 Stromal 30.2% 0.89 0.35
NSCLC_38242124__IMC__88_B8,10 Lung Primary cancer 3,536 Tumor/Malignant 59.0% 0.99 0.03
NSCLC_38242124__IMC__88_B8,12 Lung Primary cancer 3,920 Tumor/Malignant 49.5% 0.99 0.06
NSCLC_38242124__IMC__88_B8,13 Lung Primary cancer 4,127 Tumor/Malignant 48.7% 0.96 0.13
NSCLC_38242124__IMC__88_B8,14 Lung Primary cancer 543 Tumor/Malignant 40.0% 0.87 0.37
NSCLC_38242124__IMC__88_B8,16 Lung Primary cancer 3,380 Tumor/Malignant 48.2% 1.00 0.05
NSCLC_38242124__IMC__88_B8,2 Lung Primary cancer 3,799 Tumor/Malignant 51.7% 0.94 0.23
NSCLC_38242124__IMC__88_B8,3 Lung Primary cancer 3,990 Tumor/Malignant 33.2% 0.94 0.21

Spatial Domain (Tier 3)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__88_B7,12 Lung Primary cancer 2,647 Fibroblast 26.4% 0.41 1.07
NSCLC_38242124__IMC__88_B7,13 Lung Primary cancer 4,755 Tumor/Malignant cell 63.4% 0.97 0.10
NSCLC_38242124__IMC__88_B7,14 Lung Primary cancer 284 Other 63.7% 0.80 0.45
NSCLC_38242124__IMC__88_B7,16 Lung Primary cancer 844 Tumor/Malignant cell 34.4% 0.70 0.60
NSCLC_38242124__IMC__88_B7,2 Lung Primary cancer 1,854 Fibroblast 39.5% 0.85 0.39
NSCLC_38242124__IMC__88_B7,3 Lung Primary cancer 4,192 Fibroblast 27.2% 0.74 0.64
NSCLC_38242124__IMC__88_B7,4 Lung Primary cancer 460 Tumor/Malignant cell 69.8% 0.93 0.17
NSCLC_38242124__IMC__88_B7,5 Lung Primary cancer 5,248 Tumor/Malignant cell 53.3% 0.97 0.11
NSCLC_38242124__IMC__88_B7,6 Lung Primary cancer 3,607 Tumor/Malignant cell 73.3% 0.98 0.10
NSCLC_38242124__IMC__88_B7,7 Lung Primary cancer 3,116 B cell 39.7% 0.91 0.25
NSCLC_38242124__IMC__88_B7,8 Lung Primary cancer 201 Tumor/Malignant cell 77.6% 0.54 0.58
NSCLC_38242124__IMC__88_B7,9 Lung Primary cancer 367 Tumor/Malignant cell 54.0% 0.96 0.18
NSCLC_38242124__IMC__88_B8,1 Lung Primary cancer 2,911 Fibroblast 35.5% 0.82 0.45
NSCLC_38242124__IMC__88_B8,10 Lung Primary cancer 3,536 Tumor/Malignant cell 75.7% 0.98 0.05
NSCLC_38242124__IMC__88_B8,12 Lung Primary cancer 3,920 Tumor/Malignant cell 54.2% 0.97 0.11
NSCLC_38242124__IMC__88_B8,13 Lung Primary cancer 4,127 Tumor/Malignant cell 58.2% 0.92 0.21
NSCLC_38242124__IMC__88_B8,14 Lung Primary cancer 543 Tumor/Malignant cell 43.3% 0.86 0.41
NSCLC_38242124__IMC__88_B8,16 Lung Primary cancer 3,380 Tumor/Malignant cell 77.1% 0.92 0.20
NSCLC_38242124__IMC__88_B8,2 Lung Primary cancer 3,799 Tumor/Malignant cell 53.5% 0.93 0.26
NSCLC_38242124__IMC__88_B8,3 Lung Primary cancer 3,990 Tumor/Malignant cell 38.7% 0.91 0.29