scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__88_B7,12 Lung Primary cancer 2,647 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B7,13 Lung Primary cancer 4,755 0.36 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_B7,14 Lung Primary cancer 284 0.08 0.25 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_B7,16 Lung Primary cancer 844 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B7,2 Lung Primary cancer 1,854 0.13 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_B7,3 Lung Primary cancer 4,192 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B7,4 Lung Primary cancer 460 0.28 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B7,5 Lung Primary cancer 5,248 0.24 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B7,6 Lung Primary cancer 3,607 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B7,7 Lung Primary cancer 3,116 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B7,8 Lung Primary cancer 201 0.20 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B7,9 Lung Primary cancer 367 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B8,1 Lung Primary cancer 2,911 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B8,10 Lung Primary cancer 3,536 0.34 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B8,12 Lung Primary cancer 3,920 0.40 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_B8,13 Lung Primary cancer 4,127 0.30 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B8,14 Lung Primary cancer 543 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B8,16 Lung Primary cancer 3,380 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B8,2 Lung Primary cancer 3,799 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B8,3 Lung Primary cancer 3,990 0.28 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__88_B7,12 Lung Primary cancer 2,647 0.23 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B7,13 Lung Primary cancer 4,755 0.36 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_B7,14 Lung Primary cancer 284 0.08 0.25 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_B7,16 Lung Primary cancer 844 0.18 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B7,2 Lung Primary cancer 1,854 0.13 0.12 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_B7,3 Lung Primary cancer 4,192 0.17 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B7,4 Lung Primary cancer 460 0.28 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B7,5 Lung Primary cancer 5,248 0.24 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B7,6 Lung Primary cancer 3,607 0.18 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B7,7 Lung Primary cancer 3,116 0.23 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B7,8 Lung Primary cancer 201 0.20 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B7,9 Lung Primary cancer 367 0.25 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B8,1 Lung Primary cancer 2,911 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B8,10 Lung Primary cancer 3,536 0.34 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B8,12 Lung Primary cancer 3,920 0.40 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_B8,13 Lung Primary cancer 4,127 0.30 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B8,14 Lung Primary cancer 543 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B8,16 Lung Primary cancer 3,380 0.23 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B8,2 Lung Primary cancer 3,799 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B8,3 Lung Primary cancer 3,990 0.28 0.17 Weakly structured Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__88_B7,12 Lung Primary cancer 2,647 0.24 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B7,13 Lung Primary cancer 4,755 0.36 0.09 Highly modular Weakly segregated
NSCLC_38242124__IMC__88_B7,14 Lung Primary cancer 284 0.09 0.12 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_B7,16 Lung Primary cancer 844 0.18 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B7,2 Lung Primary cancer 1,854 0.16 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B7,3 Lung Primary cancer 4,192 0.18 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B7,4 Lung Primary cancer 460 0.29 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B7,5 Lung Primary cancer 5,248 0.24 0.14 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B7,6 Lung Primary cancer 3,607 0.18 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B7,7 Lung Primary cancer 3,116 0.25 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B7,8 Lung Primary cancer 201 0.22 0.06 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B7,9 Lung Primary cancer 367 0.25 0.04 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B8,1 Lung Primary cancer 2,911 0.27 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B8,10 Lung Primary cancer 3,536 0.34 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B8,12 Lung Primary cancer 3,920 0.40 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__88_B8,13 Lung Primary cancer 4,127 0.30 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B8,14 Lung Primary cancer 543 0.25 0.14 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B8,16 Lung Primary cancer 3,380 0.23 0.05 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B8,2 Lung Primary cancer 3,799 0.26 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B8,3 Lung Primary cancer 3,990 0.31 0.11 Weakly structured Weakly segregated