scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Spatial Domain

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Spatial Domain (Tier 1)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__88_B8,4 Lung Primary cancer 3,835 Tumor/Malignant 63.0% 0.96 0.15
NSCLC_38242124__IMC__88_B8,5 Lung Primary cancer 4,608 Stromal 29.2% 0.90 0.30
NSCLC_38242124__IMC__88_B8,6 Lung Primary cancer 3,347 Tumor/Malignant 51.4% 0.96 0.13
NSCLC_38242124__IMC__88_B8,7 Lung Primary cancer 2,969 Tumor/Malignant 43.3% 0.95 0.22
NSCLC_38242124__IMC__88_B8,8 Lung Primary cancer 2,955 Stromal 40.6% 0.47 0.75
NSCLC_38242124__IMC__88_B8,9 Lung Primary cancer 3,102 Tumor/Malignant 52.2% 0.91 0.25
NSCLC_38242124__IMC__88_C1,1 Lung Primary cancer 2,352 Stromal 30.7% 0.73 0.66
NSCLC_38242124__IMC__88_C1,10 Lung Primary cancer 2,998 Tumor/Malignant 47.4% 0.95 0.20
NSCLC_38242124__IMC__88_C1,11 Lung Primary cancer 2,439 Tumor/Malignant 47.2% 0.93 0.25
NSCLC_38242124__IMC__88_C1,12 Lung Primary cancer 3,362 Tumor/Malignant 37.6% 0.97 0.10
NSCLC_38242124__IMC__88_C1,13 Lung Primary cancer 2,658 Tumor/Malignant 27.6% 0.88 0.33
NSCLC_38242124__IMC__88_C1,14 Lung Primary cancer 2,535 Tumor/Malignant 38.0% 0.87 0.36
NSCLC_38242124__IMC__88_C1,15 Lung Primary cancer 2,630 Tumor/Malignant 53.7% 0.92 0.24
NSCLC_38242124__IMC__88_C1,2 Lung Primary cancer 1,438 Stromal 36.0% 0.80 0.49
NSCLC_38242124__IMC__88_C1,3 Lung Primary cancer 4,167 Tumor/Malignant 33.2% 0.94 0.19
NSCLC_38242124__IMC__88_C1,5 Lung Primary cancer 2,891 Tumor/Malignant 48.9% 0.95 0.19
NSCLC_38242124__IMC__88_C1,6 Lung Primary cancer 2,689 Tumor/Malignant 41.7% 0.53 0.84
NSCLC_38242124__IMC__88_C1,7 Lung Primary cancer 125 Stromal 52.0% 0.40 0.78
NSCLC_38242124__IMC__88_C1,8 Lung Primary cancer 4,431 Immune 48.0% 0.88 0.35
NSCLC_38242124__IMC__88_C1,9 Lung Primary cancer 1,768 Immune 32.1% 0.93 0.23

Spatial Domain (Tier 2)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__88_B8,4 Lung Primary cancer 3,835 Tumor/Malignant 47.8% 1.00 0.03
NSCLC_38242124__IMC__88_B8,5 Lung Primary cancer 4,608 Stromal 27.8% 0.91 0.29
NSCLC_38242124__IMC__88_B8,6 Lung Primary cancer 3,347 Tumor/Malignant 48.6% 0.98 0.09
NSCLC_38242124__IMC__88_B8,7 Lung Primary cancer 2,969 Tumor/Malignant 44.6% 0.94 0.24
NSCLC_38242124__IMC__88_B8,8 Lung Primary cancer 2,955 Stromal 40.1% 0.48 0.75
NSCLC_38242124__IMC__88_B8,9 Lung Primary cancer 3,102 Tumor/Malignant 27.0% 0.98 0.11
NSCLC_38242124__IMC__88_C1,1 Lung Primary cancer 2,352 Stromal 26.3% 0.74 0.62
NSCLC_38242124__IMC__88_C1,10 Lung Primary cancer 2,998 Tumor/Malignant 32.7% 0.98 0.08
NSCLC_38242124__IMC__88_C1,11 Lung Primary cancer 2,439 Tumor/Malignant 46.9% 0.93 0.25
NSCLC_38242124__IMC__88_C1,12 Lung Primary cancer 3,362 Tumor/Malignant 49.2% 0.93 0.23
NSCLC_38242124__IMC__88_C1,13 Lung Primary cancer 2,658 Tumor/Malignant 26.7% 0.89 0.32
NSCLC_38242124__IMC__88_C1,14 Lung Primary cancer 2,535 Tumor/Malignant 30.1% 0.91 0.28
NSCLC_38242124__IMC__88_C1,15 Lung Primary cancer 2,630 Tumor/Malignant 30.2% 1.00 0.04
NSCLC_38242124__IMC__88_C1,2 Lung Primary cancer 1,438 Stromal 31.2% 0.82 0.46
NSCLC_38242124__IMC__88_C1,3 Lung Primary cancer 4,167 Tumor/Malignant 34.1% 0.93 0.21
NSCLC_38242124__IMC__88_C1,5 Lung Primary cancer 2,891 Tumor/Malignant 49.3% 0.95 0.19
NSCLC_38242124__IMC__88_C1,6 Lung Primary cancer 2,689 Tumor/Malignant 37.0% 0.53 0.84
NSCLC_38242124__IMC__88_C1,7 Lung Primary cancer 125 Stromal 52.0% 0.40 0.78
NSCLC_38242124__IMC__88_C1,8 Lung Primary cancer 4,431 Myeloid 48.0% 0.88 0.35
NSCLC_38242124__IMC__88_C1,9 Lung Primary cancer 1,768 Myeloid 29.3% 0.89 0.34

Spatial Domain (Tier 3)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__88_B8,4 Lung Primary cancer 3,835 Tumor/Malignant cell 62.0% 0.97 0.14
NSCLC_38242124__IMC__88_B8,5 Lung Primary cancer 4,608 Endothelial cell 34.0% 0.50 0.65
NSCLC_38242124__IMC__88_B8,6 Lung Primary cancer 3,347 Tumor/Malignant cell 51.0% 0.97 0.12
NSCLC_38242124__IMC__88_B8,7 Lung Primary cancer 2,969 Tumor/Malignant cell 53.2% 0.90 0.34
NSCLC_38242124__IMC__88_B8,8 Lung Primary cancer 2,955 Tumor/Malignant cell 45.2% 0.84 0.47
NSCLC_38242124__IMC__88_B8,9 Lung Primary cancer 3,102 Tumor/Malignant cell 50.9% 0.92 0.25
NSCLC_38242124__IMC__88_C1,1 Lung Primary cancer 2,352 Fibroblast 31.1% 0.63 0.85
NSCLC_38242124__IMC__88_C1,10 Lung Primary cancer 2,998 Tumor/Malignant cell 53.0% 0.92 0.26
NSCLC_38242124__IMC__88_C1,11 Lung Primary cancer 2,439 Tumor/Malignant cell 47.2% 0.93 0.25
NSCLC_38242124__IMC__88_C1,12 Lung Primary cancer 3,362 Tumor/Malignant cell 48.3% 0.94 0.23
NSCLC_38242124__IMC__88_C1,13 Lung Primary cancer 2,658 Tumor/Malignant cell 28.4% 0.88 0.35
NSCLC_38242124__IMC__88_C1,14 Lung Primary cancer 2,535 Tumor/Malignant cell 37.6% 0.87 0.35
NSCLC_38242124__IMC__88_C1,15 Lung Primary cancer 2,630 Tumor/Malignant cell 53.7% 0.92 0.24
NSCLC_38242124__IMC__88_C1,2 Lung Primary cancer 1,438 Fibroblast 31.6% 0.79 0.51
NSCLC_38242124__IMC__88_C1,3 Lung Primary cancer 4,167 Tumor/Malignant cell 34.9% 0.93 0.23
NSCLC_38242124__IMC__88_C1,5 Lung Primary cancer 2,891 Tumor/Malignant cell 48.9% 0.95 0.19
NSCLC_38242124__IMC__88_C1,6 Lung Primary cancer 2,689 Tumor/Malignant cell 44.6% 0.84 0.51
NSCLC_38242124__IMC__88_C1,7 Lung Primary cancer 125 Tumor/Malignant cell 52.0% 0.29 0.91
NSCLC_38242124__IMC__88_C1,8 Lung Primary cancer 4,431 Granulocyte 51.9% 0.87 0.36
NSCLC_38242124__IMC__88_C1,9 Lung Primary cancer 1,768 Myeloid cell, unspecified 30.3% 0.87 0.40