scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__88_B8,4 Lung Primary cancer 3,835 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B8,5 Lung Primary cancer 4,608 0.30 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B8,6 Lung Primary cancer 3,347 0.35 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B8,7 Lung Primary cancer 2,969 0.30 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B8,8 Lung Primary cancer 2,955 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B8,9 Lung Primary cancer 3,102 0.30 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C1,1 Lung Primary cancer 2,352 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C1,10 Lung Primary cancer 2,998 0.27 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C1,11 Lung Primary cancer 2,439 0.14 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_C1,12 Lung Primary cancer 3,362 0.41 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_C1,13 Lung Primary cancer 2,658 0.30 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C1,14 Lung Primary cancer 2,535 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C1,15 Lung Primary cancer 2,630 0.33 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C1,2 Lung Primary cancer 1,438 0.09 0.14 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_C1,3 Lung Primary cancer 4,167 0.37 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_C1,5 Lung Primary cancer 2,891 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C1,6 Lung Primary cancer 2,689 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C1,7 Lung Primary cancer 125 0.34 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C1,8 Lung Primary cancer 4,431 0.15 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C1,9 Lung Primary cancer 1,768 0.23 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__88_B8,4 Lung Primary cancer 3,835 0.25 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B8,5 Lung Primary cancer 4,608 0.30 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B8,6 Lung Primary cancer 3,347 0.35 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B8,7 Lung Primary cancer 2,969 0.30 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B8,8 Lung Primary cancer 2,955 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_B8,9 Lung Primary cancer 3,102 0.30 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C1,1 Lung Primary cancer 2,352 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C1,10 Lung Primary cancer 2,998 0.27 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C1,11 Lung Primary cancer 2,439 0.14 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_C1,12 Lung Primary cancer 3,362 0.42 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_C1,13 Lung Primary cancer 2,658 0.30 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C1,14 Lung Primary cancer 2,535 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C1,15 Lung Primary cancer 2,630 0.34 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C1,2 Lung Primary cancer 1,438 0.09 0.15 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_C1,3 Lung Primary cancer 4,167 0.37 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_C1,5 Lung Primary cancer 2,891 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C1,6 Lung Primary cancer 2,689 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C1,7 Lung Primary cancer 125 0.35 0.15 Highly modular Weakly segregated
NSCLC_38242124__IMC__88_C1,8 Lung Primary cancer 4,431 0.15 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C1,9 Lung Primary cancer 1,768 0.28 0.17 Weakly structured Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__88_B8,4 Lung Primary cancer 3,835 0.25 0.05 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B8,5 Lung Primary cancer 4,608 0.38 0.12 Highly modular Weakly segregated
NSCLC_38242124__IMC__88_B8,6 Lung Primary cancer 3,347 0.35 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B8,7 Lung Primary cancer 2,969 0.30 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B8,8 Lung Primary cancer 2,955 0.24 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_B8,9 Lung Primary cancer 3,102 0.30 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C1,1 Lung Primary cancer 2,352 0.24 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C1,10 Lung Primary cancer 2,998 0.27 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C1,11 Lung Primary cancer 2,439 0.14 0.12 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_C1,12 Lung Primary cancer 3,362 0.45 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__88_C1,13 Lung Primary cancer 2,658 0.30 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C1,14 Lung Primary cancer 2,535 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C1,15 Lung Primary cancer 2,630 0.34 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C1,2 Lung Primary cancer 1,438 0.10 0.12 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_C1,3 Lung Primary cancer 4,167 0.37 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__88_C1,5 Lung Primary cancer 2,891 0.25 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C1,6 Lung Primary cancer 2,689 0.26 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C1,7 Lung Primary cancer 125 0.36 0.10 Highly modular Weakly segregated
NSCLC_38242124__IMC__88_C1,8 Lung Primary cancer 4,431 0.16 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C1,9 Lung Primary cancer 1,768 0.30 0.11 Weakly structured Weakly segregated