scAtria single-cell spatial atlas resource

OSCC_41707652 · IMC / Imaging Mass Cytometry

OSCC_41707652 · OSCC_41707652__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered
Features

Cell-ontology markers

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Features tested
27
Label tier
cell_type_tier_3
Marker output
114 rows
QC
Caveat
Seurat FindAllMarkers, one curated cell-ontology label versus all others. Effect size is logFC; significance is BH FDR.
Cell ontology Feature logFC FDR p value
Endothelial cell PROX1 3.660 0.00e+0 0.00e+0
Endothelial cell CD31 3.269 0.00e+0 0.00e+0
Endothelial cell CD73 2.414 0.00e+0 0.00e+0
Endothelial cell CD206 2.349 0.00e+0 0.00e+0
Endothelial cell CD276 2.197 0.00e+0 0.00e+0
Endothelial cell SMA 2.108 0.00e+0 0.00e+0
Endothelial cell IDO1 1.973 0.00e+0 0.00e+0
Endothelial cell LYVE1 1.951 0.00e+0 0.00e+0
Endothelial cell PODP 1.568 0.00e+0 0.00e+0
Endothelial cell CD3 1.403 0.00e+0 0.00e+0
Endothelial cell ECAD 1.248 0.00e+0 0.00e+0
Endothelial cell VMT 1.224 0.00e+0 0.00e+0
Endothelial cell CD45 1.149 0.00e+0 0.00e+0
Endothelial cell CD8A 0.955 0.00e+0 0.00e+0
Endothelial cell TIM3 0.877 0.00e+0 0.00e+0
Endothelial cell KI67 0.507 0.00e+0 0.00e+0
Endothelial cell PDL1 2.769 1.26e-277 8.55e-278
Endothelial cell GZYB 0.670 2.47e-148 1.78e-148
Endothelial cell PDL2 2.944 1.01e-146 7.68e-147
Endothelial cell VISTA 1.903 2.27e-128 1.81e-128
Endothelial cell FOXP3 2.495 6.60e-85 5.54e-85
Endothelial cell LAG3 3.344 4.34e-42 3.82e-42
Endothelial cell PD1 2.934 8.05e-28 7.41e-28
Endothelial cell COL1 0.279 5.91e-16 5.67e-16
Endothelial cell CD56 3.469 1.62e-4 1.62e-4
T cell CD3 2.500 0.00e+0 0.00e+0
T cell CD8A 2.289 0.00e+0 0.00e+0
T cell CD45 1.654 0.00e+0 0.00e+0
T cell FOXP3 1.543 0.00e+0 0.00e+0
T cell PD1 1.256 0.00e+0 0.00e+0
T cell LAG3 1.174 0.00e+0 0.00e+0
T cell PROX1 1.027 0.00e+0 0.00e+0
T cell PDL1 0.870 0.00e+0 0.00e+0
T cell PDL2 0.869 0.00e+0 0.00e+0
T cell CD73 0.769 0.00e+0 0.00e+0
T cell CD276 0.722 0.00e+0 0.00e+0
T cell CD206 0.701 0.00e+0 0.00e+0
T cell IDO1 0.678 0.00e+0 0.00e+0
T cell VISTA 0.619 0.00e+0 0.00e+0
T cell VMT 0.589 0.00e+0 0.00e+0
T cell DNA1 0.546 0.00e+0 0.00e+0
T cell DNA3 0.543 0.00e+0 0.00e+0
T cell TIM3 0.479 0.00e+0 0.00e+0
T cell LYVE1 0.462 0.00e+0 0.00e+0
T cell CD56 1.010 3.36e-5 3.36e-5
Immune cell, unspecified CD56 2.401 0.00e+0 0.00e+0
Immune cell, unspecified LAG3 2.243 0.00e+0 0.00e+0
Immune cell, unspecified CD31 1.967 0.00e+0 0.00e+0
Immune cell, unspecified PDL2 1.955 0.00e+0 0.00e+0
Immune cell, unspecified PD1 1.951 0.00e+0 0.00e+0
Immune cell, unspecified PDL1 1.813 0.00e+0 0.00e+0
Immune cell, unspecified CD45 1.661 0.00e+0 0.00e+0
Immune cell, unspecified CD206 1.596 0.00e+0 0.00e+0
Immune cell, unspecified CD73 1.563 0.00e+0 0.00e+0
Immune cell, unspecified VISTA 1.554 0.00e+0 0.00e+0
Immune cell, unspecified CD276 1.413 0.00e+0 0.00e+0
Immune cell, unspecified IDO1 1.349 0.00e+0 0.00e+0
Immune cell, unspecified GZYB 0.915 0.00e+0 0.00e+0
Immune cell, unspecified VMT 0.484 0.00e+0 0.00e+0
Immune cell, unspecified ECAD 0.443 0.00e+0 0.00e+0
Immune cell, unspecified COL1 0.291 0.00e+0 0.00e+0
Immune cell, unspecified LYVE1 0.848 8.40e-139 7.14e-139
Immune cell, unspecified PROX1 2.213 2.28e-15 2.05e-15
Immune cell, unspecified TIM3 0.462 1.76e-3 1.67e-3
Immune cell, unspecified CD3 0.582 1.04e-2 1.04e-2
Tumor/Malignant cell ECAD 2.336 0.00e+0 0.00e+0
Tumor/Malignant cell KI67 1.705 0.00e+0 0.00e+0
Tumor/Malignant cell PODP 1.230 0.00e+0 0.00e+0
Tumor/Malignant cell CD56 1.188 0.00e+0 0.00e+0
Tumor/Malignant cell PDL2 0.919 0.00e+0 0.00e+0
Tumor/Malignant cell IDO1 0.810 0.00e+0 0.00e+0
Tumor/Malignant cell PDL1 0.680 0.00e+0 0.00e+0
Tumor/Malignant cell CD276 0.671 0.00e+0 0.00e+0
Tumor/Malignant cell PD1 0.634 0.00e+0 0.00e+0
Tumor/Malignant cell TIM3 0.624 0.00e+0 0.00e+0
Tumor/Malignant cell CD206 0.608 0.00e+0 0.00e+0
Tumor/Malignant cell GZYB 0.576 0.00e+0 0.00e+0
Tumor/Malignant cell FOXP3 0.432 0.00e+0 0.00e+0
Tumor/Malignant cell CD73 0.269 0.00e+0 0.00e+0
Tumor/Malignant cell LAG3 0.947 7.50e-281 7.03e-281
Tumor/Malignant cell PROX1 0.922 1.24e-24 1.24e-24
Other PD1 2.138 0.00e+0 0.00e+0
Other CD31 1.937 0.00e+0 0.00e+0
Other VISTA 1.414 0.00e+0 0.00e+0
Other IDO1 1.398 0.00e+0 0.00e+0
Other GZYB 1.118 0.00e+0 0.00e+0
Other CD3 0.728 0.00e+0 0.00e+0
Other CD45 0.639 0.00e+0 0.00e+0
Other TIM3 0.413 0.00e+0 0.00e+0
Other CD206 1.647 2.07e-305 8.46e-306
Other CD8A 0.488 1.22e-298 5.53e-299
Other FOXP3 1.723 2.07e-236 1.04e-236
Other KI67 0.392 2.22e-171 1.21e-171
Other PODP 0.911 5.71e-137 3.37e-137
Other SMA 0.618 8.18e-118 5.21e-118
Other ECAD 0.779 4.52e-108 3.08e-108
Other CD73 1.588 2.43e-88 1.76e-88
Other PDL2 2.213 1.32e-52 1.02e-52
Other LAG3 2.495 5.89e-34 4.82e-34
Other CD56 2.660 8.74e-24 7.55e-24
Other PROX1 2.521 8.08e-23 7.35e-23
Other COL1 0.268 1.95e-15 1.86e-15
Other VMT 0.255 8.25e-10 8.25e-10
Stromal cell, unspecified CD56 1.025 0.00e+0 0.00e+0
Stromal cell, unspecified COL1 0.925 0.00e+0 0.00e+0
Stromal cell, unspecified LAG3 0.892 0.00e+0 0.00e+0
Stromal cell, unspecified PROX1 0.850 0.00e+0 0.00e+0
Stromal cell, unspecified SMA 0.756 0.00e+0 0.00e+0
Stromal cell, unspecified PDL2 0.682 0.00e+0 0.00e+0
Stromal cell, unspecified PD1 0.611 0.00e+0 0.00e+0
Stromal cell, unspecified PDL1 0.604 0.00e+0 0.00e+0
Stromal cell, unspecified CD206 0.401 0.00e+0 0.00e+0
Stromal cell, unspecified FOXP3 0.257 0.00e+0 0.00e+0
Stromal cell, unspecified CD73 0.461 9.05e-118 9.05e-118