scAtria single-cell spatial atlas resource

RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI

RheumatoidArthritis_39609125 · RheumatoidArthritis_39609125__CosMx_SMI

CosMx SMI / NanoString SMI Spatial transcriptomics
Spatial analyses

Dataset sample manifest

Dataset-specific sample status for each public spatial analysis page.

1-50 of 60
Domains Interaction Topology Download sample CSV
Domains

Neighborhood-domain samples

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Sample Organ Cells Graph Tiers Open Downloads
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F001 Musculoskeletal 2,766 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F002 Musculoskeletal 1,617 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F003 Musculoskeletal 1,762 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F004 Musculoskeletal 3,143 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F005 Musculoskeletal 2,691 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F006 Musculoskeletal 1,625 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F007 Musculoskeletal 1,701 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F008 Musculoskeletal 1,033 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F009 Musculoskeletal 2,573 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F010 Musculoskeletal 1,685 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F011 Musculoskeletal 611 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F012 Musculoskeletal 403 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F013 Musculoskeletal 2,148 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F014 Musculoskeletal 1,027 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F017 Musculoskeletal 426 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F018 Musculoskeletal 539 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F021 Musculoskeletal 934 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F022 Musculoskeletal 317 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F023 Musculoskeletal 426 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F001 Musculoskeletal 591 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F002 Musculoskeletal 629 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F003 Musculoskeletal 1,333 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F004 Musculoskeletal 873 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F006 Musculoskeletal 334 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F007 Musculoskeletal 817 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F008 Musculoskeletal 595 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F009 Musculoskeletal 401 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F010 Musculoskeletal 558 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F011 Musculoskeletal 1,211 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F012 Musculoskeletal 827 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F013 Musculoskeletal 1,379 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F014 Musculoskeletal 930 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F015 Musculoskeletal 1,220 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F017 Musculoskeletal 997 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F018 Musculoskeletal 814 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F019 Musculoskeletal 342 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F020 Musculoskeletal 772 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G7G72_G22G5_F001 Musculoskeletal 1,672 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G7G72_G22G5_F002 Musculoskeletal 2,010 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G7G72_G22G5_F003 Musculoskeletal 941 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G7G72_G22G5_F004 Musculoskeletal 1,393 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G7G72_G22G5_F005 Musculoskeletal 930 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G7G72_G22G5_F009 Musculoskeletal 1,228 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G7G72_G22G5_F010 Musculoskeletal 956 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G7G72_G22G5_F011 Musculoskeletal 923 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G7G72_G22G5_F012 Musculoskeletal 3,065 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G7G72_G22G5_F013 Musculoskeletal 6,357 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G7G72_G22G5_F014 Musculoskeletal 2,484 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G7G72_G22G5_F015 Musculoskeletal 1,875 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G7G72_G22G5_F016 Musculoskeletal 3,255 NA T1T2T3 View NA
Interaction Propensity

Cell-type contact samples

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Sample Organ Cells Graph Tiers Open Downloads
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F001 Musculoskeletal 2,766 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F002 Musculoskeletal 1,617 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F003 Musculoskeletal 1,762 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F004 Musculoskeletal 3,143 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F005 Musculoskeletal 2,691 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F006 Musculoskeletal 1,625 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F007 Musculoskeletal 1,701 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F008 Musculoskeletal 1,033 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F009 Musculoskeletal 2,573 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F010 Musculoskeletal 1,685 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F011 Musculoskeletal 611 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F012 Musculoskeletal 403 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F013 Musculoskeletal 2,148 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F014 Musculoskeletal 1,027 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F017 Musculoskeletal 426 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F018 Musculoskeletal 539 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F021 Musculoskeletal 934 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F022 Musculoskeletal 317 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F023 Musculoskeletal 426 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F001 Musculoskeletal 591 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F002 Musculoskeletal 629 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F003 Musculoskeletal 1,333 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F004 Musculoskeletal 873 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F006 Musculoskeletal 334 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F007 Musculoskeletal 817 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F008 Musculoskeletal 595 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F009 Musculoskeletal 401 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F010 Musculoskeletal 558 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F011 Musculoskeletal 1,211 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F012 Musculoskeletal 827 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F013 Musculoskeletal 1,379 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F014 Musculoskeletal 930 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F015 Musculoskeletal 1,220 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F017 Musculoskeletal 997 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F018 Musculoskeletal 814 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F019 Musculoskeletal 342 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F020 Musculoskeletal 772 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G7G72_G22G5_F001 Musculoskeletal 1,672 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G7G72_G22G5_F002 Musculoskeletal 2,010 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G7G72_G22G5_F003 Musculoskeletal 941 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G7G72_G22G5_F004 Musculoskeletal 1,393 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G7G72_G22G5_F005 Musculoskeletal 930 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G7G72_G22G5_F009 Musculoskeletal 1,228 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G7G72_G22G5_F010 Musculoskeletal 956 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G7G72_G22G5_F011 Musculoskeletal 923 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G7G72_G22G5_F012 Musculoskeletal 3,065 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G7G72_G22G5_F013 Musculoskeletal 6,357 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G7G72_G22G5_F014 Musculoskeletal 2,484 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G7G72_G22G5_F015 Musculoskeletal 1,875 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G7G72_G22G5_F016 Musculoskeletal 3,255 NA T1T2T3 View NA
Network Topology

Graph-topology samples

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Sample Organ Cells Graph Tiers Open Downloads
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F001 Musculoskeletal 2,766 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F002 Musculoskeletal 1,617 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F003 Musculoskeletal 1,762 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F004 Musculoskeletal 3,143 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F005 Musculoskeletal 2,691 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F006 Musculoskeletal 1,625 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F007 Musculoskeletal 1,701 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F008 Musculoskeletal 1,033 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F009 Musculoskeletal 2,573 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F010 Musculoskeletal 1,685 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F011 Musculoskeletal 611 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F012 Musculoskeletal 403 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F013 Musculoskeletal 2,148 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F014 Musculoskeletal 1,027 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F017 Musculoskeletal 426 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F018 Musculoskeletal 539 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F021 Musculoskeletal 934 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F022 Musculoskeletal 317 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F023 Musculoskeletal 426 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F001 Musculoskeletal 591 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F002 Musculoskeletal 629 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F003 Musculoskeletal 1,333 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F004 Musculoskeletal 873 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F006 Musculoskeletal 334 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F007 Musculoskeletal 817 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F008 Musculoskeletal 595 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F009 Musculoskeletal 401 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F010 Musculoskeletal 558 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F011 Musculoskeletal 1,211 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F012 Musculoskeletal 827 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F013 Musculoskeletal 1,379 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F014 Musculoskeletal 930 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F015 Musculoskeletal 1,220 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F017 Musculoskeletal 997 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F018 Musculoskeletal 814 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F019 Musculoskeletal 342 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G2697_G1532_F020 Musculoskeletal 772 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G7G72_G22G5_F001 Musculoskeletal 1,672 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G7G72_G22G5_F002 Musculoskeletal 2,010 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G7G72_G22G5_F003 Musculoskeletal 941 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G7G72_G22G5_F004 Musculoskeletal 1,393 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G7G72_G22G5_F005 Musculoskeletal 930 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G7G72_G22G5_F009 Musculoskeletal 1,228 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G7G72_G22G5_F010 Musculoskeletal 956 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G7G72_G22G5_F011 Musculoskeletal 923 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G7G72_G22G5_F012 Musculoskeletal 3,065 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G7G72_G22G5_F013 Musculoskeletal 6,357 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G7G72_G22G5_F014 Musculoskeletal 2,484 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G7G72_G22G5_F015 Musculoskeletal 1,875 NA T1T2T3 View NA
RheumatoidArthritis_39609125__CosMx_SMI__Run5666_G7G72_G22G5_F016 Musculoskeletal 3,255 NA T1T2T3 View NA