scAtria single-cell spatial atlas resource

UlcerativeColitis_38374043 CosMx 960-plex Run 1

UlcerativeColitis_38374043 CosMx 960-plex Run 1 ยท UlcerativeColitisRun1_38374043__CosMx_SMI

CosMx SMI / NanoString SMI Spatial transcriptomics Curated Tiered PMID 38374043 DOI 10.1038/s41467-024-45665-6
Overview Curated
Samples17 samples
Cells66,379
DEG analysesNot ready
Spatial analysesReady 17/17 samples
AnnotationCurated tiered
Organs
Large intestine 17
Reference
Single-cell and spatial multi-omics highlight effects of anti-integrin therapy across cellular compartments in ulcerative colitis.
Mennillo E, Kim YJ, Lee G, Rusu I, Patel RK, Dorman LC, Flynn E, Li S et al.
Nature Communications | 2024
PMID 38374043 · DOI 10.1038/s41467-024-45665-6
PubMed PMID 38374043 DOI 10.1038/s41467-024-45665-6
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UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal CosMx SMI / NanoString SMI | Spatial transcriptomics | 73 samples | 126,368 cells