scAtria single-cell spatial atlas resource

UlcerativeColitis_38374043 CosMx 960-plex Run 1

UlcerativeColitis_38374043 CosMx 960-plex Run 1 ยท UlcerativeColitisRun1_38374043__CosMx_SMI

CosMx SMI / NanoString SMI Spatial transcriptomics Curated Tiered PMID 38374043 DOI 10.1038/s41467-024-45665-6
Samples

Sample manifest

1-17 of 17
Sample Organ ?When a dataset spans multiple organs, the fraction shows how many samples map to each organ. Disease state Disease detail Cells Curation Spatial modules
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV1 Large intestine Non-cancer disease Ulcerative colitis (vedolizumab-treated) 4,964 Curated Domains, Interaction, Topology
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV11 Large intestine Non-cancer disease Ulcerative colitis 4,257 Curated Domains, Interaction, Topology
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV13 Large intestine Non-cancer disease Ulcerative colitis 3,170 Curated Domains, Interaction, Topology
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV14 Large intestine Healthy/control Healthy colon control 3,475 Curated Domains, Interaction, Topology
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV15 Large intestine Healthy/control Healthy colon control 2,946 Curated Domains, Interaction, Topology
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV16 Large intestine Healthy/control Healthy colon control 2,666 Curated Domains, Interaction, Topology
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV17 Large intestine Healthy/control Healthy colon control 2,829 Curated Domains, Interaction, Topology
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV18 Large intestine Healthy/control Healthy colon control 2,527 Curated Domains, Interaction, Topology
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV19 Large intestine Healthy/control Healthy colon control 2,355 Curated Domains, Interaction, Topology
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV2 Large intestine Non-cancer disease Ulcerative colitis (vedolizumab-treated) 4,864 Curated Domains, Interaction, Topology
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV20 Large intestine Healthy/control Healthy colon control 3,271 Curated Domains, Interaction, Topology
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV21 Large intestine Healthy/control Healthy colon control 5,165 Curated Domains, Interaction, Topology
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV3 Large intestine Non-cancer disease Ulcerative colitis (vedolizumab-treated) 3,697 Curated Domains, Interaction, Topology
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV4 Large intestine Non-cancer disease Ulcerative colitis (vedolizumab-treated) 5,284 Curated Domains, Interaction, Topology
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV5 Large intestine Non-cancer disease Ulcerative colitis 4,446 Curated Domains, Interaction, Topology
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV6 Large intestine Non-cancer disease Ulcerative colitis 6,271 Curated NA
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV9 Large intestine Non-cancer disease Ulcerative colitis (vedolizumab-treated) 4,192 Curated Domains, Interaction, Topology