scAtria single-cell spatial atlas resource

UlcerativeColitis_38374043 CosMx 960-plex Run 1

UlcerativeColitis_38374043 CosMx 960-plex Run 1 · UlcerativeColitisRun1_38374043__CosMx_SMI

CosMx SMI / NanoString SMI Spatial transcriptomics Curated Tiered
Spatial analyses

Dataset sample manifest

Dataset-specific sample status for each public spatial analysis page.

1-17 of 17
Domains Interaction Topology Download sample CSV
Domains

Neighborhood-domain samples

16 ready Open page
Sample Organ Cells Graph Tiers Open Downloads
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV1 Large intestine 4,964 Ready T1T2T3 View
Manifest Domain summary
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV11 Large intestine 4,257 Ready T1T2T3 View
Manifest Domain summary
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV13 Large intestine 3,170 Ready T1T2T3 View
Manifest Domain summary
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV14 Large intestine 3,475 Ready T1T2T3 View
Manifest Domain summary
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV15 Large intestine 2,946 Ready T1T2T3 View
Manifest Domain summary
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV16 Large intestine 2,666 Ready T1T2T3 View
Manifest Domain summary
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV17 Large intestine 2,829 Ready T1T2T3 View
Manifest Domain summary
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV18 Large intestine 2,527 Ready T1T2T3 View
Manifest Domain summary
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV19 Large intestine 2,355 Ready T1T2T3 View
Manifest Domain summary
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV2 Large intestine 4,864 Ready T1T2T3 View
Manifest Domain summary
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV20 Large intestine 3,271 Ready T1T2T3 View
Manifest Domain summary
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV21 Large intestine 5,165 Ready T1T2T3 View
Manifest Domain summary
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV3 Large intestine 3,697 Ready T1T2T3 View
Manifest Domain summary
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV4 Large intestine 5,284 Ready T1T2T3 View
Manifest Domain summary
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV5 Large intestine 4,446 Ready T1T2T3 View
Manifest Domain summary
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV6 Large intestine 6,271 NA T1T2T3 View NA
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV9 Large intestine 4,192 Ready T1T2T3 View
Manifest Domain summary
Interaction Propensity

Cell-type contact samples

16 ready Open page
Sample Organ Cells Graph Tiers Open Downloads
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV1 Large intestine 4,964 Ready T1T2T3 View
Manifest Pair summary
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV11 Large intestine 4,257 Ready T1T2T3 View
Manifest Pair summary
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV13 Large intestine 3,170 Ready T1T2T3 View
Manifest Pair summary
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV14 Large intestine 3,475 Ready T1T2T3 View
Manifest Pair summary
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV15 Large intestine 2,946 Ready T1T2T3 View
Manifest Pair summary
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV16 Large intestine 2,666 Ready T1T2T3 View
Manifest Pair summary
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV17 Large intestine 2,829 Ready T1T2T3 View
Manifest Pair summary
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV18 Large intestine 2,527 Ready T1T2T3 View
Manifest Pair summary
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV19 Large intestine 2,355 Ready T1T2T3 View
Manifest Pair summary
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV2 Large intestine 4,864 Ready T1T2T3 View
Manifest Pair summary
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV20 Large intestine 3,271 Ready T1T2T3 View
Manifest Pair summary
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV21 Large intestine 5,165 Ready T1T2T3 View
Manifest Pair summary
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV3 Large intestine 3,697 Ready T1T2T3 View
Manifest Pair summary
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV4 Large intestine 5,284 Ready T1T2T3 View
Manifest Pair summary
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV5 Large intestine 4,446 Ready T1T2T3 View
Manifest Pair summary
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV6 Large intestine 6,271 NA T1T2T3 View NA
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV9 Large intestine 4,192 Ready T1T2T3 View
Manifest Pair summary
Network Topology

Graph-topology samples

16 ready Open page
Sample Organ Cells Graph Tiers Open Downloads
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV1 Large intestine 4,964 Ready T1T2T3 View
Manifest Topology summary
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV11 Large intestine 4,257 Ready T1T2T3 View
Manifest Topology summary
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV13 Large intestine 3,170 Ready T1T2T3 View
Manifest Topology summary
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV14 Large intestine 3,475 Ready T1T2T3 View
Manifest Topology summary
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV15 Large intestine 2,946 Ready T1T2T3 View
Manifest Topology summary
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV16 Large intestine 2,666 Ready T1T2T3 View
Manifest Topology summary
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV17 Large intestine 2,829 Ready T1T2T3 View
Manifest Topology summary
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV18 Large intestine 2,527 Ready T1T2T3 View
Manifest Topology summary
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV19 Large intestine 2,355 Ready T1T2T3 View
Manifest Topology summary
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV2 Large intestine 4,864 Ready T1T2T3 View
Manifest Topology summary
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV20 Large intestine 3,271 Ready T1T2T3 View
Manifest Topology summary
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV21 Large intestine 5,165 Ready T1T2T3 View
Manifest Topology summary
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV3 Large intestine 3,697 Ready T1T2T3 View
Manifest Topology summary
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV4 Large intestine 5,284 Ready T1T2T3 View
Manifest Topology summary
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV5 Large intestine 4,446 Ready T1T2T3 View
Manifest Topology summary
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV6 Large intestine 6,271 NA T1T2T3 View NA
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV9 Large intestine 4,192 Ready T1T2T3 View
Manifest Topology summary