scAtria single-cell spatial atlas resource

UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal

UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal ยท UlcerativeColitisRun2_38374043__CosMx_SMI

CosMx SMI / NanoString SMI Spatial transcriptomics Curated Tiered PMID 38374043 DOI 10.1038/s41467-024-45665-6
Samples

Sample manifest

1-50 of 73
Sample Organ ?When a dataset spans multiple organs, the fraction shows how many samples map to each organ. Disease state Disease detail Cells Curation Spatial modules
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV1 Large intestine Non-cancer disease Ulcerative colitis (post-vedolizumab, responder) 1,113 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV10 Large intestine Non-cancer disease Ulcerative colitis (post-vedolizumab, responder) 1,674 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV11 Large intestine Healthy/control Healthy colon control 1,158 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV12 Large intestine Non-cancer disease Ulcerative colitis (post-vedolizumab, responder) 1,267 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV13 Large intestine Non-cancer disease Ulcerative colitis (pre-vedolizumab, responder) 1,705 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV14 Large intestine Healthy/control Healthy colon control 998 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV15 Large intestine Non-cancer disease Ulcerative colitis (post-vedolizumab, non-responder) 2,168 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV16 Large intestine Non-cancer disease Ulcerative colitis (pre-vedolizumab, non-responder) 2,331 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV17 Large intestine Non-cancer disease Ulcerative colitis (post-vedolizumab, non-responder) 1,806 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV18 Large intestine Non-cancer disease Ulcerative colitis (pre-vedolizumab, non-responder) 2,188 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV19 Large intestine Non-cancer disease Ulcerative colitis (pre-vedolizumab, responder) 1,269 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV2 Large intestine Non-cancer disease Ulcerative colitis (pre-vedolizumab, responder) 2,495 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV20 Large intestine Non-cancer disease Ulcerative colitis (pre-vedolizumab, responder) 3,351 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV21 Large intestine Non-cancer disease Ulcerative colitis (post-vedolizumab, non-responder) 656 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV22 Large intestine Non-cancer disease Ulcerative colitis (post-vedolizumab, non-responder) 1,445 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV24 Large intestine Non-cancer disease Ulcerative colitis (pre-vedolizumab, non-responder) 2,815 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV25 Large intestine Healthy/control Healthy colon control 708 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV26 Large intestine Non-cancer disease Ulcerative colitis (post-vedolizumab, non-responder) 2,303 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV27 Large intestine Non-cancer disease Ulcerative colitis (pre-vedolizumab, non-responder) 1,985 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV28 Large intestine Non-cancer disease Ulcerative colitis (pre-vedolizumab, responder) 1,515 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV29 Large intestine Non-cancer disease Ulcerative colitis (pre-vedolizumab, responder) 1,407 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV3 Large intestine Healthy/control Healthy colon control 1,258 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV30 Large intestine Healthy/control Healthy colon control 2,007 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV31 Large intestine Healthy/control Healthy colon control 827 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV32 Large intestine Non-cancer disease Ulcerative colitis (pre-vedolizumab, responder) 1,753 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV34 Large intestine Healthy/control Healthy colon control 845 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV35 Large intestine Non-cancer disease Ulcerative colitis (pre-vedolizumab, responder) 1,597 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV36 Large intestine Healthy/control Healthy colon control 931 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV37 Large intestine Non-cancer disease Ulcerative colitis (post-vedolizumab, responder) 1,383 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV38 Large intestine Healthy/control Healthy colon control 1,828 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV4 Large intestine Non-cancer disease Ulcerative colitis (pre-vedolizumab, responder) 2,625 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV40 Large intestine Non-cancer disease Ulcerative colitis (post-vedolizumab, responder) 1,726 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV41 Large intestine Non-cancer disease Ulcerative colitis (pre-vedolizumab, responder) 3,257 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV44 Large intestine Non-cancer disease Ulcerative colitis (pre-vedolizumab, responder) 1,804 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV45 Large intestine Healthy/control Healthy colon control 1,386 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV46 Large intestine Healthy/control Healthy colon control 1,403 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV47 Large intestine Non-cancer disease Ulcerative colitis (post-vedolizumab, responder) 862 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV48 Large intestine Non-cancer disease Ulcerative colitis (pre-vedolizumab, responder) 1,804 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV49 Large intestine Healthy/control Healthy colon control 1,499 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV5 Large intestine Healthy/control Healthy colon control 1,739 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV50 Large intestine Non-cancer disease Ulcerative colitis (post-vedolizumab, responder) 1,962 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV51 Large intestine Non-cancer disease Ulcerative colitis (pre-vedolizumab, responder) 2,247 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV53 Large intestine Non-cancer disease Ulcerative colitis (post-vedolizumab, responder) 1,370 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV54 Large intestine Healthy/control Healthy colon control 712 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV55 Large intestine Non-cancer disease Ulcerative colitis (post-vedolizumab, responder) 1,254 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV56 Large intestine Non-cancer disease Ulcerative colitis (pre-vedolizumab, responder) 1,889 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV57 Large intestine Healthy/control Healthy colon control 1,523 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV58 Large intestine Healthy/control Healthy colon control 2,600 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV59 Large intestine Non-cancer disease Ulcerative colitis (post-vedolizumab, non-responder) 3,182 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV6 Large intestine Non-cancer disease Ulcerative colitis (pre-vedolizumab, responder) 1,620 Curated Domains, Interaction, Topology