scAtria single-cell spatial atlas resource

UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal

UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal ยท UlcerativeColitisRun2_38374043__CosMx_SMI

CosMx SMI / NanoString SMI Spatial transcriptomics Curated Tiered PMID 38374043 DOI 10.1038/s41467-024-45665-6
Samples

Sample manifest

51-73 of 73
Sample Organ ?When a dataset spans multiple organs, the fraction shows how many samples map to each organ. Disease state Disease detail Cells Curation Spatial modules
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV60 Large intestine Non-cancer disease Ulcerative colitis (pre-vedolizumab, non-responder) 2,464 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV61 Large intestine Non-cancer disease Ulcerative colitis (post-vedolizumab, non-responder) 1,354 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV62 Large intestine Non-cancer disease Ulcerative colitis (pre-vedolizumab, responder) 2,706 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV63 Large intestine Non-cancer disease Ulcerative colitis (pre-vedolizumab, responder) 2,183 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV64 Large intestine Non-cancer disease Ulcerative colitis (pre-vedolizumab, responder) 2,310 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV65 Large intestine Non-cancer disease Ulcerative colitis (post-vedolizumab, responder) 1,668 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV66 Large intestine Healthy/control Healthy colon control 1,305 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV67 Large intestine Non-cancer disease Ulcerative colitis (pre-vedolizumab, responder) 2,462 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV7 Large intestine Healthy/control Healthy colon control 963 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV70 Large intestine Healthy/control Healthy colon control 1,075 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV71 Large intestine Non-cancer disease Ulcerative colitis (pre-vedolizumab, responder) 1,515 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV72 Large intestine Non-cancer disease Ulcerative colitis (pre-vedolizumab, responder) 1,829 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV73 Large intestine Non-cancer disease Ulcerative colitis (pre-vedolizumab, non-responder) 2,486 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV74 Large intestine Non-cancer disease Ulcerative colitis (post-vedolizumab, non-responder) 1,829 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV75 Large intestine Non-cancer disease Ulcerative colitis (pre-vedolizumab, non-responder) 1,573 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV76 Large intestine Healthy/control Healthy colon control 854 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV77 Large intestine Healthy/control Healthy colon control 631 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV78 Large intestine Non-cancer disease Ulcerative colitis (pre-vedolizumab, responder) 1,312 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV79 Large intestine Non-cancer disease Ulcerative colitis (pre-vedolizumab, responder) 2,223 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV8 Large intestine Non-cancer disease Ulcerative colitis (pre-vedolizumab, responder) 2,527 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV80 Large intestine Non-cancer disease Ulcerative colitis (pre-vedolizumab, responder) 3,145 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV81 Large intestine Healthy/control Healthy colon control 1,834 Curated Domains, Interaction, Topology
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV9 Large intestine Healthy/control Healthy colon control 870 Curated Domains, Interaction, Topology