scAtria single-cell spatial atlas resource

UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal

UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal · UlcerativeColitisRun2_38374043__CosMx_SMI

CosMx SMI / NanoString SMI Spatial transcriptomics Curated Tiered
Spatial analyses

Dataset sample manifest

Dataset-specific sample status for each public spatial analysis page.

51-73 of 73
Domains Interaction Topology Download sample CSV
Domains

Neighborhood-domain samples

73 ready Open page
Sample Organ Cells Graph Tiers Open Downloads
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV60 Large intestine 2,464 Ready T1T2T3 View
Manifest Domain summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV61 Large intestine 1,354 Ready T1T2T3 View
Manifest Domain summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV62 Large intestine 2,706 Ready T1T2T3 View
Manifest Domain summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV63 Large intestine 2,183 Ready T1T2T3 View
Manifest Domain summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV64 Large intestine 2,310 Ready T1T2T3 View
Manifest Domain summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV65 Large intestine 1,668 Ready T1T2T3 View
Manifest Domain summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV66 Large intestine 1,305 Ready T1T2T3 View
Manifest Domain summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV67 Large intestine 2,462 Ready T1T2T3 View
Manifest Domain summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV7 Large intestine 963 Ready T1T2T3 View
Manifest Domain summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV70 Large intestine 1,075 Ready T1T2T3 View
Manifest Domain summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV71 Large intestine 1,515 Ready T1T2T3 View
Manifest Domain summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV72 Large intestine 1,829 Ready T1T2T3 View
Manifest Domain summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV73 Large intestine 2,486 Ready T1T2T3 View
Manifest Domain summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV74 Large intestine 1,829 Ready T1T2T3 View
Manifest Domain summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV75 Large intestine 1,573 Ready T1T2T3 View
Manifest Domain summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV76 Large intestine 854 Ready T1T2T3 View
Manifest Domain summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV77 Large intestine 631 Ready T1T2T3 View
Manifest Domain summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV78 Large intestine 1,312 Ready T1T2T3 View
Manifest Domain summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV79 Large intestine 2,223 Ready T1T2T3 View
Manifest Domain summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV8 Large intestine 2,527 Ready T1T2T3 View
Manifest Domain summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV80 Large intestine 3,145 Ready T1T2T3 View
Manifest Domain summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV81 Large intestine 1,834 Ready T1T2T3 View
Manifest Domain summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV9 Large intestine 870 Ready T1T2T3 View
Manifest Domain summary
Interaction Propensity

Cell-type contact samples

73 ready Open page
Sample Organ Cells Graph Tiers Open Downloads
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV60 Large intestine 2,464 Ready T1T2T3 View
Manifest Pair summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV61 Large intestine 1,354 Ready T1T2T3 View
Manifest Pair summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV62 Large intestine 2,706 Ready T1T2T3 View
Manifest Pair summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV63 Large intestine 2,183 Ready T1T2T3 View
Manifest Pair summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV64 Large intestine 2,310 Ready T1T2T3 View
Manifest Pair summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV65 Large intestine 1,668 Ready T1T2T3 View
Manifest Pair summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV66 Large intestine 1,305 Ready T1T2T3 View
Manifest Pair summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV67 Large intestine 2,462 Ready T1T2T3 View
Manifest Pair summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV7 Large intestine 963 Ready T1T2T3 View
Manifest Pair summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV70 Large intestine 1,075 Ready T1T2T3 View
Manifest Pair summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV71 Large intestine 1,515 Ready T1T2T3 View
Manifest Pair summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV72 Large intestine 1,829 Ready T1T2T3 View
Manifest Pair summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV73 Large intestine 2,486 Ready T1T2T3 View
Manifest Pair summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV74 Large intestine 1,829 Ready T1T2T3 View
Manifest Pair summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV75 Large intestine 1,573 Ready T1T2T3 View
Manifest Pair summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV76 Large intestine 854 Ready T1T2T3 View
Manifest Pair summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV77 Large intestine 631 Ready T1T2T3 View
Manifest Pair summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV78 Large intestine 1,312 Ready T1T2T3 View
Manifest Pair summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV79 Large intestine 2,223 Ready T1T2T3 View
Manifest Pair summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV8 Large intestine 2,527 Ready T1T2T3 View
Manifest Pair summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV80 Large intestine 3,145 Ready T1T2T3 View
Manifest Pair summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV81 Large intestine 1,834 Ready T1T2T3 View
Manifest Pair summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV9 Large intestine 870 Ready T1T2T3 View
Manifest Pair summary
Network Topology

Graph-topology samples

73 ready Open page
Sample Organ Cells Graph Tiers Open Downloads
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV60 Large intestine 2,464 Ready T1T2T3 View
Manifest Topology summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV61 Large intestine 1,354 Ready T1T2T3 View
Manifest Topology summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV62 Large intestine 2,706 Ready T1T2T3 View
Manifest Topology summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV63 Large intestine 2,183 Ready T1T2T3 View
Manifest Topology summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV64 Large intestine 2,310 Ready T1T2T3 View
Manifest Topology summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV65 Large intestine 1,668 Ready T1T2T3 View
Manifest Topology summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV66 Large intestine 1,305 Ready T1T2T3 View
Manifest Topology summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV67 Large intestine 2,462 Ready T1T2T3 View
Manifest Topology summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV7 Large intestine 963 Ready T1T2T3 View
Manifest Topology summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV70 Large intestine 1,075 Ready T1T2T3 View
Manifest Topology summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV71 Large intestine 1,515 Ready T1T2T3 View
Manifest Topology summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV72 Large intestine 1,829 Ready T1T2T3 View
Manifest Topology summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV73 Large intestine 2,486 Ready T1T2T3 View
Manifest Topology summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV74 Large intestine 1,829 Ready T1T2T3 View
Manifest Topology summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV75 Large intestine 1,573 Ready T1T2T3 View
Manifest Topology summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV76 Large intestine 854 Ready T1T2T3 View
Manifest Topology summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV77 Large intestine 631 Ready T1T2T3 View
Manifest Topology summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV78 Large intestine 1,312 Ready T1T2T3 View
Manifest Topology summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV79 Large intestine 2,223 Ready T1T2T3 View
Manifest Topology summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV8 Large intestine 2,527 Ready T1T2T3 View
Manifest Topology summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV80 Large intestine 3,145 Ready T1T2T3 View
Manifest Topology summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV81 Large intestine 1,834 Ready T1T2T3 View
Manifest Topology summary
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV9 Large intestine 870 Ready T1T2T3 View
Manifest Topology summary