scAtria single-cell spatial atlas resource

10x Genomics Visium HD showcase

10x Genomics Visium HD showcase ยท Visium_HD_10xGenomics__Visium_HD

Visium HD Spatial transcriptomics Curated Tiered PMID 40473992 DOI 10.1038/s41588-025-02193-3
Overview Curated
Samples24 samples
Cells5,379,712
DEG analysesNot ready
Spatial analysesPartial 21/24 samples
AnnotationCurated tiered
Organs
Breast 3 Kidney 1 Large intestine 5 Lung 5 Lymphoid tissue 2 Ovary 5 Pancreas 2 Prostate 1
Reference
High-definition spatial transcriptomic profiling of immune cell populations in colorectal cancer.
Oliveira MF, Romero JP, Chung M, Williams SR, Gottscho AD, Gupta A, Pilipauskas SE, Mohabbat S et al.
Nature Genetics | 2025
PMID 40473992 · DOI 10.1038/s41588-025-02193-3
PubMed PMID 40473992 DOI 10.1038/s41588-025-02193-3 10x official datasets