scAtria single-cell spatial atlas resource

10x Genomics Visium HD showcase

10x Genomics Visium HD showcase ยท Visium_HD_10xGenomics__Visium_HD

Visium HD Spatial transcriptomics Curated Tiered PMID 40473992 DOI 10.1038/s41588-025-02193-3
Samples

Sample manifest

1-24 of 24
Sample Organ ?When a dataset spans multiple organs, the fraction shows how many samples map to each organ. Disease state Disease detail Cells Curation Spatial modules
Visium_HD_10xGenomics__Visium_HD__Visium_HD_3prime_Human_Ovarian_Cancer Ovary Primary cancer Ovarian cancer (clear cell adenocarcinoma) 200,764 Curated Domains, Interaction, Topology
Visium_HD_10xGenomics__Visium_HD__Visium_HD_3prime_Human_Ovarian_Cancer_FF Ovary Primary cancer Ovarian cancer (papillary serous carcinoma) 258,911 Curated NA
Visium_HD_10xGenomics__Visium_HD__Visium_HD_3prime_Human_Ovarian_Cancer_FF_Min_Depth Ovary Primary cancer Ovarian cancer (papillary serous carcinoma) 258,896 Curated Domains, Interaction, Topology
Visium_HD_10xGenomics__Visium_HD__Visium_HD_3prime_Human_Pancreatic_Cancer Pancreas Primary cancer Pancreatic cancer 252,214 Curated Domains, Interaction, Topology
Visium_HD_10xGenomics__Visium_HD__Visium_HD_FF_Human_Breast_Cancer Breast Primary cancer Breast cancer 38,993 Curated Domains, Interaction, Topology
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Breast_Cancer_Fixed_Frozen Breast Primary cancer Breast cancer (invasive ductal carcinoma) 439,422 Curated NA
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Breast_Cancer_Fresh_Frozen Breast Primary cancer Breast cancer (ductal carcinoma in situ) 159,301 Curated Domains, Interaction, Topology
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Cancer Large intestine Primary cancer Colorectal cancer (adenocarcinoma) 220,703 Curated Domains, Interaction, Topology
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Cancer_P1 Large intestine Primary cancer Colorectal cancer (adenocarcinoma) 217,921 Curated Domains, Interaction, Topology
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Cancer_P5 Large intestine Primary cancer Colorectal cancer (adenocarcinoma) 151,153 Curated Domains, Interaction, Topology
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Normal_P3 Large intestine Primary cancer Colorectal cancer (adenocarcinoma) 75,410 Curated Domains, Interaction, Topology
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Normal_P5 Large intestine Primary cancer Colorectal cancer (adenocarcinoma) 138,127 Curated Domains, Interaction, Topology
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Kidney_FFPE Kidney Healthy/control Healthy human 148,056 Curated Domains, Interaction, Topology
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_Fixed_Frozen Lung Primary cancer Lung adenocarcinoma 285,367 Curated Domains, Interaction, Topology
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_HD_Only_Experiment1 Lung Primary cancer Lung cancer (invasive acinar adenocarcinoma) 149,347 Curated Domains, Interaction, Topology
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_HD_Only_Experiment2 Lung Primary cancer Lung cancer (invasive acinar adenocarcinoma) 165,128 Curated Domains, Interaction, Topology
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_post_Xenium_Prime_5K_Experiment2 Lung Primary cancer Lung cancer (invasive acinar adenocarcinoma) 155,513 Curated Domains, Interaction, Topology
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_post_Xenium_v1_Experiment1 Lung Primary cancer Lung cancer (invasive acinar adenocarcinoma) 159,463 Curated Domains, Interaction, Topology
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lymph_Node_FFPE Lymphoid tissue Healthy/control Healthy human 300,211 Curated Domains, Interaction, Topology
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Ovarian_Cancer_FF Ovary Primary cancer Ovarian cancer (papillary serous carcinoma) 183,450 Curated Domains, Interaction, Topology
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Ovarian_Cancer_FF_Min_Depth Ovary Primary cancer Ovarian cancer (papillary serous carcinoma) 183,449 Curated Domains, Interaction, Topology
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Pancreas Pancreas Healthy/control Healthy human 50,897 Curated Domains, Interaction, Topology
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Prostate_Cancer_FFPE Prostate Primary cancer Prostate cancer (adenocarcinoma) 227,257 Curated Domains, Interaction, Topology
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Tonsil_Fresh_Frozen Lymphoid tissue Healthy/control Reactive Follicular Hyperplasia 959,759 Curated NA