scAtria single-cell spatial atlas resource

10x Genomics Visium HD showcase

10x Genomics Visium HD showcase · Visium_HD_10xGenomics__Visium_HD

Visium HD Spatial transcriptomics Curated Tiered
Spatial analyses

Dataset sample manifest

Dataset-specific sample status for each public spatial analysis page.

1-24 of 24
Domains Interaction Topology Download sample CSV
Domains

Neighborhood-domain samples

21 ready Open page
Sample Organ Cells Graph Tiers Open Downloads
Visium_HD_10xGenomics__Visium_HD__Visium_HD_3prime_Human_Ovarian_Cancer Ovary 200,764 Ready T1T2T3 View
Manifest Domain summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_3prime_Human_Ovarian_Cancer_FF Ovary 258,911 NA T1T2T3 View NA
Visium_HD_10xGenomics__Visium_HD__Visium_HD_3prime_Human_Ovarian_Cancer_FF_Min_Depth Ovary 258,896 Ready T1T2T3 View
Manifest Domain summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_3prime_Human_Pancreatic_Cancer Pancreas 252,214 Ready T1T2T3 View
Manifest Domain summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_FF_Human_Breast_Cancer Breast 38,993 Ready T1T2T3 View
Manifest Domain summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Breast_Cancer_Fixed_Frozen Breast 439,422 NA T1T2T3 View NA
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Breast_Cancer_Fresh_Frozen Breast 159,301 Ready T1T2T3 View
Manifest Domain summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Cancer Large intestine 220,703 Ready T1T2T3 View
Manifest Domain summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Cancer_P1 Large intestine 217,921 Ready T1T2T3 View
Manifest Domain summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Cancer_P5 Large intestine 151,153 Ready T1T2T3 View
Manifest Domain summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Normal_P3 Large intestine 75,410 Ready T1T2T3 View
Manifest Domain summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Normal_P5 Large intestine 138,127 Ready T1T2T3 View
Manifest Domain summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Kidney_FFPE Kidney 148,056 Ready T1T2T3 View
Manifest Domain summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_Fixed_Frozen Lung 285,367 Ready T1T2T3 View
Manifest Domain summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_HD_Only_Experiment1 Lung 149,347 Ready T1T2T3 View
Manifest Domain summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_HD_Only_Experiment2 Lung 165,128 Ready T1T2T3 View
Manifest Domain summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_post_Xenium_Prime_5K_Experiment2 Lung 155,513 Ready T1T2T3 View
Manifest Domain summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_post_Xenium_v1_Experiment1 Lung 159,463 Ready T1T2T3 View
Manifest Domain summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lymph_Node_FFPE Lymphoid tissue 300,211 Ready T1T2T3 View
Manifest Domain summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Ovarian_Cancer_FF Ovary 183,450 Ready T1T2T3 View
Manifest Domain summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Ovarian_Cancer_FF_Min_Depth Ovary 183,449 Ready T1T2T3 View
Manifest Domain summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Pancreas Pancreas 50,897 Ready T1T2T3 View
Manifest Domain summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Prostate_Cancer_FFPE Prostate 227,257 Ready T1T2T3 View
Manifest Domain summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Tonsil_Fresh_Frozen Lymphoid tissue 959,759 NA T1T2T3 View NA
Interaction Propensity

Cell-type contact samples

21 ready Open page
Sample Organ Cells Graph Tiers Open Downloads
Visium_HD_10xGenomics__Visium_HD__Visium_HD_3prime_Human_Ovarian_Cancer Ovary 200,764 Ready T1T2T3 View
Manifest Pair summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_3prime_Human_Ovarian_Cancer_FF Ovary 258,911 NA T1T2T3 View NA
Visium_HD_10xGenomics__Visium_HD__Visium_HD_3prime_Human_Ovarian_Cancer_FF_Min_Depth Ovary 258,896 Ready T1T2T3 View
Manifest Pair summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_3prime_Human_Pancreatic_Cancer Pancreas 252,214 Ready T1T2T3 View
Manifest Pair summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_FF_Human_Breast_Cancer Breast 38,993 Ready T1T2T3 View
Manifest Pair summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Breast_Cancer_Fixed_Frozen Breast 439,422 NA T1T2T3 View NA
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Breast_Cancer_Fresh_Frozen Breast 159,301 Ready T1T2T3 View
Manifest Pair summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Cancer Large intestine 220,703 Ready T1T2T3 View
Manifest Pair summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Cancer_P1 Large intestine 217,921 Ready T1T2T3 View
Manifest Pair summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Cancer_P5 Large intestine 151,153 Ready T1T2T3 View
Manifest Pair summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Normal_P3 Large intestine 75,410 Ready T1T2T3 View
Manifest Pair summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Normal_P5 Large intestine 138,127 Ready T1T2T3 View
Manifest Pair summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Kidney_FFPE Kidney 148,056 Ready T1T2T3 View
Manifest Pair summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_Fixed_Frozen Lung 285,367 Ready T1T2T3 View
Manifest Pair summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_HD_Only_Experiment1 Lung 149,347 Ready T1T2T3 View
Manifest Pair summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_HD_Only_Experiment2 Lung 165,128 Ready T1T2T3 View
Manifest Pair summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_post_Xenium_Prime_5K_Experiment2 Lung 155,513 Ready T1T2T3 View
Manifest Pair summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_post_Xenium_v1_Experiment1 Lung 159,463 Ready T1T2T3 View
Manifest Pair summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lymph_Node_FFPE Lymphoid tissue 300,211 Ready T1T2T3 View
Manifest Pair summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Ovarian_Cancer_FF Ovary 183,450 Ready T1T2T3 View
Manifest Pair summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Ovarian_Cancer_FF_Min_Depth Ovary 183,449 Ready T1T2T3 View
Manifest Pair summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Pancreas Pancreas 50,897 Ready T1T2T3 View
Manifest Pair summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Prostate_Cancer_FFPE Prostate 227,257 Ready T1T2T3 View
Manifest Pair summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Tonsil_Fresh_Frozen Lymphoid tissue 959,759 NA T1T2T3 View NA
Network Topology

Graph-topology samples

21 ready Open page
Sample Organ Cells Graph Tiers Open Downloads
Visium_HD_10xGenomics__Visium_HD__Visium_HD_3prime_Human_Ovarian_Cancer Ovary 200,764 Ready T1T2T3 View
Manifest Topology summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_3prime_Human_Ovarian_Cancer_FF Ovary 258,911 NA T1T2T3 View NA
Visium_HD_10xGenomics__Visium_HD__Visium_HD_3prime_Human_Ovarian_Cancer_FF_Min_Depth Ovary 258,896 Ready T1T2T3 View
Manifest Topology summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_3prime_Human_Pancreatic_Cancer Pancreas 252,214 Ready T1T2T3 View
Manifest Topology summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_FF_Human_Breast_Cancer Breast 38,993 Ready T1T2T3 View
Manifest Topology summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Breast_Cancer_Fixed_Frozen Breast 439,422 NA T1T2T3 View NA
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Breast_Cancer_Fresh_Frozen Breast 159,301 Ready T1T2T3 View
Manifest Topology summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Cancer Large intestine 220,703 Ready T1T2T3 View
Manifest Topology summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Cancer_P1 Large intestine 217,921 Ready T1T2T3 View
Manifest Topology summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Cancer_P5 Large intestine 151,153 Ready T1T2T3 View
Manifest Topology summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Normal_P3 Large intestine 75,410 Ready T1T2T3 View
Manifest Topology summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Normal_P5 Large intestine 138,127 Ready T1T2T3 View
Manifest Topology summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Kidney_FFPE Kidney 148,056 Ready T1T2T3 View
Manifest Topology summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_Fixed_Frozen Lung 285,367 Ready T1T2T3 View
Manifest Topology summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_HD_Only_Experiment1 Lung 149,347 Ready T1T2T3 View
Manifest Topology summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_HD_Only_Experiment2 Lung 165,128 Ready T1T2T3 View
Manifest Topology summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_post_Xenium_Prime_5K_Experiment2 Lung 155,513 Ready T1T2T3 View
Manifest Topology summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_post_Xenium_v1_Experiment1 Lung 159,463 Ready T1T2T3 View
Manifest Topology summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lymph_Node_FFPE Lymphoid tissue 300,211 Ready T1T2T3 View
Manifest Topology summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Ovarian_Cancer_FF Ovary 183,450 Ready T1T2T3 View
Manifest Topology summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Ovarian_Cancer_FF_Min_Depth Ovary 183,449 Ready T1T2T3 View
Manifest Topology summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Pancreas Pancreas 50,897 Ready T1T2T3 View
Manifest Topology summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Prostate_Cancer_FFPE Prostate 227,257 Ready T1T2T3 View
Manifest Topology summary
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Tonsil_Fresh_Frozen Lymphoid tissue 959,759 NA T1T2T3 View NA