Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase

Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase ยท XeniumBreastJanesick_10xGenomics__Xenium

Xenium Spatial transcriptomics Curated Tiered DOI 10.64898/2025.12.08.692193
Samples

Sample manifest

1-12 of 12
Sample Organ ?When a dataset spans multiple organs, the fraction shows how many samples map to each organ. Disease state Disease detail Cells Curation Spatial modules
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S1_Bot Breast Primary cancer Breast cancer (DCIS, HER2-1+) 254,480 Curated NA
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S1_Mid Breast Primary cancer Breast cancer (DCIS, ER+/PR+/HER2-2+) 375,529 Curated NA
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S1_Top Breast Primary cancer Breast cancer (IDC, HER2-) 209,467 Curated NA
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S2_Bot Breast Primary cancer Breast cancer (DCIS, HER2-3+) 358,519 Curated NA
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S2_Mid Breast Primary cancer Breast cancer (DCIS, HER2-2+) 380,739 Curated NA
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S2_Top Breast Healthy/control Healthy human 301,854 Curated NA
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S3_Bot Breast Primary cancer Breast cancer (DCIS, ER-/PR-/HER2-2+) 150,145 Curated NA
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S3_Mid Breast Primary cancer Breast cancer (DCIS, ER+/PR+/HER2-2+) 373,150 Curated NA
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S3_Top Breast Primary cancer Breast cancer (CCH/DCIS, ER+/PR+/HER2-1+) 308,531 Curated NA
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S4_Bot Breast Primary cancer Breast cancer (DCIS, HER2-1+) 201,955 Curated NA
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S4_Mid Breast Primary cancer Breast cancer (IDC, ER+/PR+/HER2-2+) 335,709 Curated NA
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S4_Top Breast Primary cancer Breast cancer (IDC, ER+/PR+/HER2-1+) 192,898 Curated NA