scAtria single-cell spatial atlas resource

Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase

Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase ยท XeniumBreastJanesick_10xGenomics__Xenium

Xenium Spatial transcriptomics Curated Tiered
Spatial analyses

Dataset sample manifest

Dataset-specific sample status for each public spatial analysis page.

1-12 of 12
Domains Interaction Topology Download sample CSV
Domains

Neighborhood-domain samples

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Sample Organ Cells Graph Tiers Open Downloads
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S1_Bot Breast 254,480 NA T1T2T3 View NA
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S1_Mid Breast 375,529 NA T1T2T3 View NA
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S1_Top Breast 209,467 NA T1T2T3 View NA
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S2_Bot Breast 358,519 NA T1T2T3 View NA
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S2_Mid Breast 380,739 NA T1T2T3 View NA
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S2_Top Breast 301,854 NA T1T2T3 View NA
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S3_Bot Breast 150,145 NA T1T2T3 View NA
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S3_Mid Breast 373,150 NA T1T2T3 View NA
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S3_Top Breast 308,531 NA T1T2T3 View NA
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S4_Bot Breast 201,955 NA T1T2T3 View NA
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S4_Mid Breast 335,709 NA T1T2T3 View NA
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S4_Top Breast 192,898 NA T1T2T3 View NA
Interaction Propensity

Cell-type contact samples

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Sample Organ Cells Graph Tiers Open Downloads
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S1_Bot Breast 254,480 NA T1T2T3 View NA
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S1_Mid Breast 375,529 NA T1T2T3 View NA
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S1_Top Breast 209,467 NA T1T2T3 View NA
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S2_Bot Breast 358,519 NA T1T2T3 View NA
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S2_Mid Breast 380,739 NA T1T2T3 View NA
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S2_Top Breast 301,854 NA T1T2T3 View NA
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S3_Bot Breast 150,145 NA T1T2T3 View NA
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S3_Mid Breast 373,150 NA T1T2T3 View NA
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S3_Top Breast 308,531 NA T1T2T3 View NA
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S4_Bot Breast 201,955 NA T1T2T3 View NA
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S4_Mid Breast 335,709 NA T1T2T3 View NA
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S4_Top Breast 192,898 NA T1T2T3 View NA
Network Topology

Graph-topology samples

0 ready Open page
Sample Organ Cells Graph Tiers Open Downloads
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S1_Bot Breast 254,480 NA T1T2T3 View NA
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S1_Mid Breast 375,529 NA T1T2T3 View NA
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S1_Top Breast 209,467 NA T1T2T3 View NA
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S2_Bot Breast 358,519 NA T1T2T3 View NA
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S2_Mid Breast 380,739 NA T1T2T3 View NA
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S2_Top Breast 301,854 NA T1T2T3 View NA
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S3_Bot Breast 150,145 NA T1T2T3 View NA
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S3_Mid Breast 373,150 NA T1T2T3 View NA
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S3_Top Breast 308,531 NA T1T2T3 View NA
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S4_Bot Breast 201,955 NA T1T2T3 View NA
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S4_Mid Breast 335,709 NA T1T2T3 View NA
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S4_Top Breast 192,898 NA T1T2T3 View NA