scAtria single-cell spatial atlas resource

cHL_41923627 · CosMx SMI / NanoString SMI

cHL_41923627 · cHL_41923627__CosMx_SMI

CosMx SMI / NanoString SMI Spatial transcriptomics Curated Tiered
Spatial analyses

Dataset sample manifest

Dataset-specific sample status for each public spatial analysis page.

1-43 of 43
Domains Interaction Topology Download sample CSV
Domains

Neighborhood-domain samples

17 ready Open page
Sample Organ Cells Graph Tiers Open Downloads
cHL_41923627__CosMx_SMI__FOV_10_HTMA_528 Lymphoid tissue 5,666 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_10_TMA_98.3 Lymphoid tissue 4,825 Ready T1T2T3 View
Manifest Domain summary
cHL_41923627__CosMx_SMI__FOV_11_HTMA_528 Lymphoid tissue 5,192 Ready T1T2T3 View
Manifest Domain summary
cHL_41923627__CosMx_SMI__FOV_13_TMA_98.3 Lymphoid tissue 7,921 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_14_HTMA_528 Lymphoid tissue 3,145 Ready T1T2T3 View
Manifest Domain summary
cHL_41923627__CosMx_SMI__FOV_14_TMA_98.3 Lymphoid tissue 6,783 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_15_HTMA_528 Lymphoid tissue 1,570 Ready T1T2T3 View
Manifest Domain summary
cHL_41923627__CosMx_SMI__FOV_15_TMA_98.3 Lymphoid tissue 7,209 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_16_HTMA_528 Lymphoid tissue 4,793 Ready T1T2T3 View
Manifest Domain summary
cHL_41923627__CosMx_SMI__FOV_16_TMA_98.3 Lymphoid tissue 4,970 Ready T1T2T3 View
Manifest Domain summary
cHL_41923627__CosMx_SMI__FOV_17_HTMA_528 Lymphoid tissue 8,160 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_17_TMA_98.3 Lymphoid tissue 6,745 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_18_HTMA_528 Lymphoid tissue 9,014 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_18_TMA_98.3 Lymphoid tissue 5,422 Ready T1T2T3 View
Manifest Domain summary
cHL_41923627__CosMx_SMI__FOV_19_HTMA_528 Lymphoid tissue 9,882 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_19_TMA_98.3 Lymphoid tissue 7,006 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_1_HTMA_528 Lymphoid tissue 7,511 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_1_TMA_98.3 Lymphoid tissue 9,854 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_20_HTMA_528 Lymphoid tissue 5,538 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_21_HTMA_528 Lymphoid tissue 4,008 Ready T1T2T3 View
Manifest Domain summary
cHL_41923627__CosMx_SMI__FOV_21_TMA_98.3 Lymphoid tissue 6,993 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_22_HTMA_528 Lymphoid tissue 2,851 Ready T1T2T3 View
Manifest Domain summary
cHL_41923627__CosMx_SMI__FOV_22_TMA_98.3 Lymphoid tissue 7,465 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_23_HTMA_528 Lymphoid tissue 8,546 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_23_TMA_98.3 Lymphoid tissue 6,917 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_24_TMA_98.3 Lymphoid tissue 6,564 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_25_HTMA_528 Lymphoid tissue 10,432 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_25_TMA_98.3 Lymphoid tissue 3,636 Ready T1T2T3 View
Manifest Domain summary
cHL_41923627__CosMx_SMI__FOV_2_HTMA_528 Lymphoid tissue 5,386 Ready T1T2T3 View
Manifest Domain summary
cHL_41923627__CosMx_SMI__FOV_2_TMA_98.3 Lymphoid tissue 6,192 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_3_HTMA_528 Lymphoid tissue 7,753 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_3_TMA_98.3 Lymphoid tissue 4,562 Ready T1T2T3 View
Manifest Domain summary
cHL_41923627__CosMx_SMI__FOV_4_TMA_98.3 Lymphoid tissue 5,692 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_5_HTMA_528 Lymphoid tissue 9,453 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_5_TMA_98.3 Lymphoid tissue 9,173 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_6_HTMA_528 Lymphoid tissue 5,557 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_6_TMA_98.3 Lymphoid tissue 7,937 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_7_HTMA_528 Lymphoid tissue 1,439 Ready T1T2T3 View
Manifest Domain summary
cHL_41923627__CosMx_SMI__FOV_7_TMA_98.3 Lymphoid tissue 3,415 Ready T1T2T3 View
Manifest Domain summary
cHL_41923627__CosMx_SMI__FOV_8_HTMA_528 Lymphoid tissue 4,695 Ready T1T2T3 View
Manifest Domain summary
cHL_41923627__CosMx_SMI__FOV_8_TMA_98.3 Lymphoid tissue 4,031 Ready T1T2T3 View
Manifest Domain summary
cHL_41923627__CosMx_SMI__FOV_9_HTMA_528 Lymphoid tissue 4,877 Ready T1T2T3 View
Manifest Domain summary
cHL_41923627__CosMx_SMI__FOV_9_TMA_98.3 Lymphoid tissue 7,419 NA T1T2T3 View NA
Interaction Propensity

Cell-type contact samples

17 ready Open page
Sample Organ Cells Graph Tiers Open Downloads
cHL_41923627__CosMx_SMI__FOV_10_HTMA_528 Lymphoid tissue 5,666 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_10_TMA_98.3 Lymphoid tissue 4,825 Ready T1T2T3 View
Manifest Pair summary
cHL_41923627__CosMx_SMI__FOV_11_HTMA_528 Lymphoid tissue 5,192 Ready T1T2T3 View
Manifest Pair summary
cHL_41923627__CosMx_SMI__FOV_13_TMA_98.3 Lymphoid tissue 7,921 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_14_HTMA_528 Lymphoid tissue 3,145 Ready T1T2T3 View
Manifest Pair summary
cHL_41923627__CosMx_SMI__FOV_14_TMA_98.3 Lymphoid tissue 6,783 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_15_HTMA_528 Lymphoid tissue 1,570 Ready T1T2T3 View
Manifest Pair summary
cHL_41923627__CosMx_SMI__FOV_15_TMA_98.3 Lymphoid tissue 7,209 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_16_HTMA_528 Lymphoid tissue 4,793 Ready T1T2T3 View
Manifest Pair summary
cHL_41923627__CosMx_SMI__FOV_16_TMA_98.3 Lymphoid tissue 4,970 Ready T1T2T3 View
Manifest Pair summary
cHL_41923627__CosMx_SMI__FOV_17_HTMA_528 Lymphoid tissue 8,160 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_17_TMA_98.3 Lymphoid tissue 6,745 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_18_HTMA_528 Lymphoid tissue 9,014 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_18_TMA_98.3 Lymphoid tissue 5,422 Ready T1T2T3 View
Manifest Pair summary
cHL_41923627__CosMx_SMI__FOV_19_HTMA_528 Lymphoid tissue 9,882 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_19_TMA_98.3 Lymphoid tissue 7,006 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_1_HTMA_528 Lymphoid tissue 7,511 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_1_TMA_98.3 Lymphoid tissue 9,854 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_20_HTMA_528 Lymphoid tissue 5,538 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_21_HTMA_528 Lymphoid tissue 4,008 Ready T1T2T3 View
Manifest Pair summary
cHL_41923627__CosMx_SMI__FOV_21_TMA_98.3 Lymphoid tissue 6,993 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_22_HTMA_528 Lymphoid tissue 2,851 Ready T1T2T3 View
Manifest Pair summary
cHL_41923627__CosMx_SMI__FOV_22_TMA_98.3 Lymphoid tissue 7,465 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_23_HTMA_528 Lymphoid tissue 8,546 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_23_TMA_98.3 Lymphoid tissue 6,917 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_24_TMA_98.3 Lymphoid tissue 6,564 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_25_HTMA_528 Lymphoid tissue 10,432 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_25_TMA_98.3 Lymphoid tissue 3,636 Ready T1T2T3 View
Manifest Pair summary
cHL_41923627__CosMx_SMI__FOV_2_HTMA_528 Lymphoid tissue 5,386 Ready T1T2T3 View
Manifest Pair summary
cHL_41923627__CosMx_SMI__FOV_2_TMA_98.3 Lymphoid tissue 6,192 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_3_HTMA_528 Lymphoid tissue 7,753 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_3_TMA_98.3 Lymphoid tissue 4,562 Ready T1T2T3 View
Manifest Pair summary
cHL_41923627__CosMx_SMI__FOV_4_TMA_98.3 Lymphoid tissue 5,692 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_5_HTMA_528 Lymphoid tissue 9,453 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_5_TMA_98.3 Lymphoid tissue 9,173 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_6_HTMA_528 Lymphoid tissue 5,557 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_6_TMA_98.3 Lymphoid tissue 7,937 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_7_HTMA_528 Lymphoid tissue 1,439 Ready T1T2T3 View
Manifest Pair summary
cHL_41923627__CosMx_SMI__FOV_7_TMA_98.3 Lymphoid tissue 3,415 Ready T1T2T3 View
Manifest Pair summary
cHL_41923627__CosMx_SMI__FOV_8_HTMA_528 Lymphoid tissue 4,695 Ready T1T2T3 View
Manifest Pair summary
cHL_41923627__CosMx_SMI__FOV_8_TMA_98.3 Lymphoid tissue 4,031 Ready T1T2T3 View
Manifest Pair summary
cHL_41923627__CosMx_SMI__FOV_9_HTMA_528 Lymphoid tissue 4,877 Ready T1T2T3 View
Manifest Pair summary
cHL_41923627__CosMx_SMI__FOV_9_TMA_98.3 Lymphoid tissue 7,419 NA T1T2T3 View NA
Network Topology

Graph-topology samples

17 ready Open page
Sample Organ Cells Graph Tiers Open Downloads
cHL_41923627__CosMx_SMI__FOV_10_HTMA_528 Lymphoid tissue 5,666 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_10_TMA_98.3 Lymphoid tissue 4,825 Ready T1T2T3 View
Manifest Topology summary
cHL_41923627__CosMx_SMI__FOV_11_HTMA_528 Lymphoid tissue 5,192 Ready T1T2T3 View
Manifest Topology summary
cHL_41923627__CosMx_SMI__FOV_13_TMA_98.3 Lymphoid tissue 7,921 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_14_HTMA_528 Lymphoid tissue 3,145 Ready T1T2T3 View
Manifest Topology summary
cHL_41923627__CosMx_SMI__FOV_14_TMA_98.3 Lymphoid tissue 6,783 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_15_HTMA_528 Lymphoid tissue 1,570 Ready T1T2T3 View
Manifest Topology summary
cHL_41923627__CosMx_SMI__FOV_15_TMA_98.3 Lymphoid tissue 7,209 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_16_HTMA_528 Lymphoid tissue 4,793 Ready T1T2T3 View
Manifest Topology summary
cHL_41923627__CosMx_SMI__FOV_16_TMA_98.3 Lymphoid tissue 4,970 Ready T1T2T3 View
Manifest Topology summary
cHL_41923627__CosMx_SMI__FOV_17_HTMA_528 Lymphoid tissue 8,160 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_17_TMA_98.3 Lymphoid tissue 6,745 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_18_HTMA_528 Lymphoid tissue 9,014 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_18_TMA_98.3 Lymphoid tissue 5,422 Ready T1T2T3 View
Manifest Topology summary
cHL_41923627__CosMx_SMI__FOV_19_HTMA_528 Lymphoid tissue 9,882 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_19_TMA_98.3 Lymphoid tissue 7,006 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_1_HTMA_528 Lymphoid tissue 7,511 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_1_TMA_98.3 Lymphoid tissue 9,854 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_20_HTMA_528 Lymphoid tissue 5,538 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_21_HTMA_528 Lymphoid tissue 4,008 Ready T1T2T3 View
Manifest Topology summary
cHL_41923627__CosMx_SMI__FOV_21_TMA_98.3 Lymphoid tissue 6,993 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_22_HTMA_528 Lymphoid tissue 2,851 Ready T1T2T3 View
Manifest Topology summary
cHL_41923627__CosMx_SMI__FOV_22_TMA_98.3 Lymphoid tissue 7,465 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_23_HTMA_528 Lymphoid tissue 8,546 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_23_TMA_98.3 Lymphoid tissue 6,917 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_24_TMA_98.3 Lymphoid tissue 6,564 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_25_HTMA_528 Lymphoid tissue 10,432 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_25_TMA_98.3 Lymphoid tissue 3,636 Ready T1T2T3 View
Manifest Topology summary
cHL_41923627__CosMx_SMI__FOV_2_HTMA_528 Lymphoid tissue 5,386 Ready T1T2T3 View
Manifest Topology summary
cHL_41923627__CosMx_SMI__FOV_2_TMA_98.3 Lymphoid tissue 6,192 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_3_HTMA_528 Lymphoid tissue 7,753 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_3_TMA_98.3 Lymphoid tissue 4,562 Ready T1T2T3 View
Manifest Topology summary
cHL_41923627__CosMx_SMI__FOV_4_TMA_98.3 Lymphoid tissue 5,692 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_5_HTMA_528 Lymphoid tissue 9,453 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_5_TMA_98.3 Lymphoid tissue 9,173 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_6_HTMA_528 Lymphoid tissue 5,557 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_6_TMA_98.3 Lymphoid tissue 7,937 NA T1T2T3 View NA
cHL_41923627__CosMx_SMI__FOV_7_HTMA_528 Lymphoid tissue 1,439 Ready T1T2T3 View
Manifest Topology summary
cHL_41923627__CosMx_SMI__FOV_7_TMA_98.3 Lymphoid tissue 3,415 Ready T1T2T3 View
Manifest Topology summary
cHL_41923627__CosMx_SMI__FOV_8_HTMA_528 Lymphoid tissue 4,695 Ready T1T2T3 View
Manifest Topology summary
cHL_41923627__CosMx_SMI__FOV_8_TMA_98.3 Lymphoid tissue 4,031 Ready T1T2T3 View
Manifest Topology summary
cHL_41923627__CosMx_SMI__FOV_9_HTMA_528 Lymphoid tissue 4,877 Ready T1T2T3 View
Manifest Topology summary
cHL_41923627__CosMx_SMI__FOV_9_TMA_98.3 Lymphoid tissue 7,419 NA T1T2T3 View NA