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scAtria
single-cell spatial atlas resource
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Cross-study comparisons
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Interaction Propensity
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Updated live; 7,167 samples in the current scope.
Applied
Dataset
All datasets
Organ
All organs
Disease state
All disease states
Technique
All techniques
Modality
All modalities
Compare
Choose one comparison and optional directed labels.
Tier
?
Each comparison uses one ontology tier at a time. Tier 1 is broad lineage, Tier 2 is broad biology, and Tier 3 is the primary cross-study cell-type level.
Tier 1
Tier 2
Tier 3
Comparison group
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Choose the metadata grouping used to summarize samples in the comparison plot and table.
Organ
Disease state
Organ × disease state
Metric
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Metrics are computed within the selected Interaction Propensity module and selected ontology tier, not mixed across tiers.
Mean propensity
From label
All cell ontologies
To label
All cell ontologies
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Matrix
Pair profile
Samples
In situ
Downloads
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Domains
Topology
Pair across samples
Sample-level profile for one interaction pair
Compare one pair across samples.
Pair
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Metric
Signed log2 propensity
Raw propensity score
Conditional propensity
Observed contacts
Interaction FDR
Samples
0
Significant
0
Top sample
NA
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Download selected pair across samples CSV
