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scAtria
single-cell spatial atlas resource
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Interaction Propensity
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Applied
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Choose one comparison and optional directed labels.
Tier
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Each comparison uses one ontology tier at a time. Tier 1 is broad lineage, Tier 2 is broad biology, and Tier 3 is the primary cross-study cell-type level.
Tier 1
Tier 2
Tier 3
Comparison group
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Choose the metadata grouping used to summarize samples in the comparison plot and table.
Organ
Disease state
Organ × disease state
Metric
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Metrics are computed within the selected Interaction Propensity module and selected ontology tier, not mixed across tiers.
Mean propensity
From label
All cell ontologies
To label
All cell ontologies
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Matrix
Pair profile
Samples
Spatial viewer
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Domains
Topology
Interaction Propensity
Directed contact matrix
X: from label. Y: to label. Red indicates enriched contact; blue indicates spatial avoidance.
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Download full interaction pair CSV
Download directional contrast CSV
