scAtria single-cell spatial atlas resource

SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion

SPATCH_41107232 · SPATCH_41107232__PCF_CODEX

PCF / CODEX / PhenoCycler Fusion Spatial proteomics Curated Tiered PMID 41107232 DOI 10.1038/s41467-025-64292-3
Overview Curated
Samples9 samples
Cells1,970,702
DEG analysesCaveat
Spatial analysesPartial 5/9 samples
AnnotationCurated tiered
Organs
Large intestine 3 Liver 3 Ovary 3
Reference
Systematic benchmarking of high-throughput subcellular spatial transcriptomics platforms across human tumors
Ren P, Zhang R, Wang Y, Zhang P, Luo C, Wang S, Li X, Zhang Z et al.
Nature Communications | 2025
PMID 41107232 · DOI 10.1038/s41467-025-64292-3
PubMed PMID 41107232 DOI 10.1038/s41467-025-64292-3 Open SPATCH
Related datasets
SPATCH_41107232 · CosMx SMI / NanoString SMI CosMx SMI / NanoString SMI | Spatial transcriptomics | 3 samples | 818,673 cells SPATCH_41107232 · Stereo-seq / Stereo-seq Spatial Transcriptomics Stereo-seq / Stereo-seq Spatial Transcriptomics | Spatial transcriptomics | 3 samples | 1,071,400 cells SPATCH_41107232 · Xenium Xenium | Spatial transcriptomics | 3 samples | 1,087,807 cells