scAtria single-cell spatial atlas resource

SPATCH_41107232 · Stereo-seq / Stereo-seq Spatial Transcriptomics

SPATCH_41107232 · SPATCH_41107232__Stereo_seq

Stereo-seq / Stereo-seq Spatial Transcriptomics Spatial transcriptomics Curated Tiered PMID 41107232 DOI 10.1038/s41467-025-64292-3
Overview Curated
Samples3 samples
Cells1,071,400
DEG analysesNot ready
Spatial analysesNot ready 0/3 samples
AnnotationCurated tiered
Organs
Large intestine 1 Liver 1 Ovary 1
Reference
Systematic benchmarking of high-throughput subcellular spatial transcriptomics platforms across human tumors
Ren P, Zhang R, Wang Y, Zhang P, Luo C, Wang S, Li X, Zhang Z et al.
Nature Communications | 2025
PMID 41107232 · DOI 10.1038/s41467-025-64292-3
PubMed PMID 41107232 DOI 10.1038/s41467-025-64292-3 Open SPATCH
Related datasets
SPATCH_41107232 · CosMx SMI / NanoString SMI CosMx SMI / NanoString SMI | Spatial transcriptomics | 3 samples | 818,673 cells SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion PCF / CODEX / PhenoCycler Fusion | Spatial proteomics | 9 samples | 1,970,702 cells SPATCH_41107232 · Xenium Xenium | Spatial transcriptomics | 3 samples | 1,087,807 cells